Hruf025905.1
Basic Information
- Insect
- Harpalus rufipes
- Gene Symbol
- -
- Assembly
- GCA_951394225.1
- Location
- OX596279.1:42042797-42043279[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-08 1.1e-05 26.9 0.0 1 39 15 52 15 55 0.90
Sequence Information
- Coding Sequence
- ATGCCACGGAACAGACCTAGAAGTAGTACTAAGGCAAAATGGACAAAAGAGGACTTAGAAAAAGCCGTGGAAGCTGTATGTAATGGTGAATCTATACGATCAACTTCAAAGAAGTGCAACATACCTTTCAGTACTTTACAAGAACGTATTAAAAAGAATCTTCCTATTATCGGACCTTCGCTAGGAAGACACTCCACTTTTTCACCTGAAGAAGAGTATCGTATGGCTGAAAATATTAAACTCTTAGCCAAATTGTTTTATGGTCTAAGTCCACTCCAGGTTCGTAGTGCAGCTTACATTTAtgctgaaaataataatataaagcaCAACTTCAACAAGGAAAAGAAGCTAGCTGGAAAGGATTGGCTTTATGGATTTTTAAAGAGAAATCCTTCAATAACTATCCGCCAGCCCGAGGCAACCAGTATTAATCGAGTGACAGCATTCAATAAAGAGGAGGTGGAATTGTTTTTTAAGAATTAG
- Protein Sequence
- MPRNRPRSSTKAKWTKEDLEKAVEAVCNGESIRSTSKKCNIPFSTLQERIKKNLPIIGPSLGRHSTFSPEEEYRMAENIKLLAKLFYGLSPLQVRSAAYIYAENNNIKHNFNKEKKLAGKDWLYGFLKRNPSITIRQPEATSINRVTAFNKEEVELFFKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327789; iTF_00012886;
- 90% Identity
- -
- 80% Identity
- -