Hruf050684.1
Basic Information
- Insect
- Harpalus rufipes
- Gene Symbol
- -
- Assembly
- GCA_951394225.1
- Location
- OX596287.1:11617683-11618114[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-10 6e-08 34.1 0.0 2 43 13 53 12 55 0.92 2 2 8 3e+03 -0.1 0.0 17 23 128 134 124 135 0.86
Sequence Information
- Coding Sequence
- ATGGCTGAAGCAAAGCAAAAACGAGCCCTTTGGGGAGAAgagtccttaaaacgtgctatgGACGCCTTGAAGAATGGAATGTCTCAGAGAAAGGTTTCCGAACAGTTTGGTATACCAAGACGCACCTTGCGTAATCACATTAAGAGCGGAAATACTAAACGTCAGCTAGGAAGAAatagcattctttcggctgcaGAAGAAATAGAATTAGTGAATCGCATCGTCCGATTTTGCAAAATTGGTATGCCGCTTATTCCCAGAATGCTGAAAAATCAAGTTTAtcgttttattgaaattaatagagaacagtatttatttaacattaatataCAATCTGCTGGAAGAACGTGGTTTAGGCTTTTCATGAAGCAACATCCAGAATTATCGCAAAGAAAAGCACAGGCGATGAATCCAGGACGTGcccaaaaatga
- Protein Sequence
- MAEAKQKRALWGEESLKRAMDALKNGMSQRKVSEQFGIPRRTLRNHIKSGNTKRQLGRNSILSAAEEIELVNRIVRFCKIGMPLIPRMLKNQVYRFIEINREQYLFNINIQSAGRTWFRLFMKQHPELSQRKAQAMNPGRAQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00788801;
- 90% Identity
- -
- 80% Identity
- -