Hruf014549.1
Basic Information
- Insect
- Harpalus rufipes
- Gene Symbol
- -
- Assembly
- GCA_951394225.1
- Location
- OX596277.1:24658860-24660491[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-14 4.1e-12 47.5 0.4 2 39 14 51 13 56 0.93
Sequence Information
- Coding Sequence
- ATGGGTAaggtttgtaaaaatattagagCGAAGTGGACGTCGGAAAGTATGGAAGCTGCAATAAAGGCTGTACAACGCGGAAGAATAAGTCAAAGAGAAGCAGCTTCTCGCTATGGGATTCCCCGACGAACTTTACGTCAACATTTGAAAACTGGAagtattgcaagaaaattaggTCGCACATCGTTACTATTACCTGCACAAGAAATAGAACTTGTAGAACGCATTGTACGCTTAGCAAACATTGGTTATCCTATAACTCCGAAAATGATGCGTCACCAAGTTTATCGCTTTATGgaaagtaacaaaataaaacacaatttcaatgaaaacaaacaacttgcTGGACGAGGTTGGTTTAGATTATTTATGAAGAGGCATCCTGAATTAGCTAAAAGAAAGGCACAGGCTATGAATGCTGCCAGAGCTCAAAAAATGAACAGGTTCATTgtaaaagattattttacaaaacttaACGAAATCTATGAAACAATGGGcttgaaaaacaaaccagaacgTATTTATAATATGGATGAAAAGGGGTGTAGGTTAACAATCCATCATCAGCAAACAGTATTAGCACGAAAAGGTACCAAACGCCTGCATCTCATAGCTCCAGAGCATGCGGAGAATGTGACAGTGGTTGCATGTGTATCAGCTACAGGGAACGTAATGCCACCAATGATACTATTTAAAGGAAAAAGAATGAAACCAGAATTTGAGGACAATTTACCTGCAGGAGCACTTGTAAAAATGTCTCCTAAGGGCAGTATGACCACAGAACTGTTTATAGAATTTATTAATCACATGGCAAAGTACAAAGTCCATGGtccaatacttttaattttcgaTGGTGCCGCTTGTCATCTGGATTACTCAATCGTCGACGCCGcagaaaaacatgaaattttattgttttgcctGCCGAGCAATACAACTCATGAATTGCAACCATTAGATAAATCGGTGTATCGAGCTTACGAGGCTTATTGGGACCAAGAGGTTTTGAATTACTGGGATCGTCATCCAGAGAGACGACTAACAAAAACaagatttaacaaaaattttTCTACGGTTTGTACAGGAATATACCCATTTGATCCTTGTGTAATACCCAGTGCTGCGTTTGCACCAAGTTTGCCCAGTGAGATTCCTTTAGATGATAATTCGGATTCGGATGATAATATTCCATTGGCTAAATTAAAGTCAGTAGAAAACGACAAAAATACATCATTTCACGAATTGATGAGTACTCCAGAAACATACACTCCTGTCAGTAATGTAGTTCGACGAAAGGCAATCAATTACAAAGCACAACAAGTCACAAAAgccttatttaaagaaaataatttaaaacttggAAAAACTGAACCTGGAACATCCAAAGAAACATCAAAGGACGAACCTCTACCAAGTACATCTAAGCAAAACCAAAATGACAGTTCCTGGTACTGCCCAGTGTGCAACATATGTGCGCAATATTCAATGCGAATGTGTGTTTCATGTCACACATGGATGCACGAACATTGCATTGGCTATACTTCATCTGACGACGAagattttgaatgtatttcttGCAGTAAATAA
- Protein Sequence
- MGKVCKNIRAKWTSESMEAAIKAVQRGRISQREAASRYGIPRRTLRQHLKTGSIARKLGRTSLLLPAQEIELVERIVRLANIGYPITPKMMRHQVYRFMESNKIKHNFNENKQLAGRGWFRLFMKRHPELAKRKAQAMNAARAQKMNRFIVKDYFTKLNEIYETMGLKNKPERIYNMDEKGCRLTIHHQQTVLARKGTKRLHLIAPEHAENVTVVACVSATGNVMPPMILFKGKRMKPEFEDNLPAGALVKMSPKGSMTTELFIEFINHMAKYKVHGPILLIFDGAACHLDYSIVDAAEKHEILLFCLPSNTTHELQPLDKSVYRAYEAYWDQEVLNYWDRHPERRLTKTRFNKNFSTVCTGIYPFDPCVIPSAAFAPSLPSEIPLDDNSDSDDNIPLAKLKSVENDKNTSFHELMSTPETYTPVSNVVRRKAINYKAQQVTKALFKENNLKLGKTEPGTSKETSKDEPLPSTSKQNQNDSSWYCPVCNICAQYSMRMCVSCHTWMHEHCIGYTSSDDEDFECISCSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00768033; iTF_00768034; iTF_00768035; iTF_00768036; iTF_00768037; iTF_00768038; iTF_00768039; iTF_00768040; iTF_00768041; iTF_00768042; iTF_00768043; iTF_00768044; iTF_00768045; iTF_00768049; iTF_00768030; iTF_00768032;
- 90% Identity
- iTF_00768033; iTF_00768034; iTF_00768035; iTF_00768036; iTF_00768037; iTF_00768038; iTF_00768039; iTF_00768040; iTF_00768041; iTF_00768042; iTF_00768043; iTF_00768044; iTF_00768045; iTF_00768049; iTF_00768030; iTF_00768032;
- 80% Identity
- -