Hruf046597.1
Basic Information
- Insect
- Harpalus rufipes
- Gene Symbol
- -
- Assembly
- GCA_951394225.1
- Location
- OX596285.1:34254770-34260050[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.2e-08 2e-05 26.1 0.0 4 34 247 277 244 283 0.89 2 2 7.7e-08 2.9e-05 25.5 0.0 3 41 459 498 457 500 0.93
Sequence Information
- Coding Sequence
- ATGCTACGTCAGCTTGGTGTCAATGTCAAAGTGGACAAAGAAATCTGTGAACATTGTATTTACGGTAAAACTCATAGATTACCTTTTGGAACCAGGGAAAGAGCAAAGAAACCAGAAAAAGCGATATTTAGTTGTGTATATTGTTACACGAAGTTTCGCTATGGATATTGTATTAGAGAGAAATCAGAAGTTAAGAATACATTGAAACATATGATTGGACATACAAAAACATTAGGCCATACTATCAAGAAATTATTAAGTGATAACGGTGGGGAATTTGATAATGCAAATGTTAAAGAAATCCTACAATCAGAAGGAATCATACAAAGATTAACGGCACCGCATTCACCCGAACAAAACGGAGGAAGTGAACGTGAAAACCGCACAATAGTAGAAATGGCAAGAACTTTCAGGTACTCAAATTTAGAAGCAAGTTTTCCAGAAGCTATGTGGGCAGAATTAGTCAATACTGccataatatatgtattaaacCGAACAGGAAAATCATCAGTTGGTATCAGTCCATATGAGTTGTGGATAGTCAAAAAACCAAGAATTAATCATTTAAGAATTATTGGATCAACATGTTATTCTCATATACCGACACAAAAAAGAAGGAAAATggataaaaaagaagaaaaaggatTTTTAGTAGGATATGATGGTGATGAAAGATACAGAATTTGGGATGCCAAAAATCCAGaagattacaattacagagagaaatataatgaaaaagatTTAGAAAATGCCGTAAATGCTATTCTACAAAATAATATGTCGCAGAAGAAGGCGGCTCATATATTTAATGTTGCTCGAAGTTCTattcaatttcaattaaaattagtagaaaagTACAACAAAATTCGACACGGGCCCCCAACAGTATTGACAGATGAGGAAGAAACCATTCTCGTTAAATGGATAACAACAAGCTGCAAGAACGGTTTCCCTAGACGAAAAGATGATATACTTTCCGCCGTAAAAGACTTTGTAGATGAGTCTCAGAGAACAAATCCGTTTACAACTACCCAGGGAATGATTgGGCCCTCAAGAGTATTCAATGGTGATGAGACTAATTTTCAACTGTGTGCTAAAAACAACCGGGTTATTGCTCCTAAGGGCGAAAGAAACGTGTACGAAATGGATATTGGGGCAGCGAAATCAACACTAACAGTAATGTTCAGCTATAGCGCAAATGGCGAAGAAATTCCTCCCATGATCATATATCCATACAAAAGAATATCAAAAGATATTGTGAAATCTGTTCTTAAAAATTGGGGCATAGGAATTAGCGACAATGGCTGGATGAAATCAGAGTTGTTTTACGAAATACCAGAAAGAAATTGTAGCTACGATAGAGGCGAAAATAAAACCAAACTACAACAGGCATTAAATGTGATAAGAACAGGGAGGATGTCAAAGAATCCAGCAGCTAAAACTTTTAACATACCCAAAGGTAccataataaataagtttaatcAGCTACATATTGGTAAAGTCGGCCGTCCGTTCATATTGACGCCTGATGAAGAAAAAGCTATAGTAGCTCACGCGTTAAAAGTCAGCGAATGGGGTTTCCCTTTTAGCCGCATTGATTTGTAA
- Protein Sequence
- MLRQLGVNVKVDKEICEHCIYGKTHRLPFGTRERAKKPEKAIFSCVYCYTKFRYGYCIREKSEVKNTLKHMIGHTKTLGHTIKKLLSDNGGEFDNANVKEILQSEGIIQRLTAPHSPEQNGGSERENRTIVEMARTFRYSNLEASFPEAMWAELVNTAIIYVLNRTGKSSVGISPYELWIVKKPRINHLRIIGSTCYSHIPTQKRRKMDKKEEKGFLVGYDGDERYRIWDAKNPEDYNYREKYNEKDLENAVNAILQNNMSQKKAAHIFNVARSSIQFQLKLVEKYNKIRHGPPTVLTDEEETILVKWITTSCKNGFPRRKDDILSAVKDFVDESQRTNPFTTTQGMIGPSRVFNGDETNFQLCAKNNRVIAPKGERNVYEMDIGAAKSTLTVMFSYSANGEEIPPMIIYPYKRISKDIVKSVLKNWGIGISDNGWMKSELFYEIPERNCSYDRGENKTKLQQALNVIRTGRMSKNPAAKTFNIPKGTIINKFNQLHIGKVGRPFILTPDEEKAIVAHALKVSEWGFPFSRIDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -