Basic Information

Transcription Factor Domain

TF Family: CUT
Domain: Homeobox|CUT
PFAM: PF02376
TF Group: Helix-turn-helix
Description: The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.18 2.4e+03 0.4 0.0 10 29 18 37 10 42 0.80

2 8 0.021 2.9e+02 3.4 0.0 9 30 43 64 36 73 0.87

3 8 0.17 2.3e+03 0.6 0.0 10 29 83 102 66 108 0.81

4 8 0.048 6.5e+02 2.3 0.0 9 29 108 128 102 133 0.86

5 8 0.03 4.1e+02 2.9 0.0 9 30 134 155 129 159 0.87

6 8 0.063 8.6e+02 1.9 0.0 17 29 155 167 140 182 0.56

7 8 0.019 2.5e+02 3.6 0.0 7 29 171 193 166 198 0.85

8 8 0.02 2.8e+02 3.5 0.0 8 29 185 206 179 209 0.85

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.18	2.4e+03	0.4	10	29	18	37	10	42	0.80
2	8	0.021	2.9e+02	3.4	9	30	43	64	36	73	0.87
3	8	0.17	2.3e+03	0.6	10	29	83	102	66	108	0.81
4	8	0.048	6.5e+02	2.3	9	29	108	128	102	133	0.86
5	8	0.03	4.1e+02	2.9	9	30	134	155	129	159	0.87
6	8	0.063	8.6e+02	1.9	17	29	155	167	140	182	0.56
7	8	0.019	2.5e+02	3.6	7	29	171	193	166	198	0.85
8	8	0.02	2.8e+02	3.5	8	29	185	206	179	209	0.85

Coding Sequence: ATGAAATCTTGGATTTCTAAAGAGATCTATGGATCCCTGACGAGATCTTGGATTTCTGAAGAGATCTATGGATCCCTGAAGAGATCTTTGATTTCTAAAGAGATCTATGGATCCCTGATGAAATCTTGGATTTCTAAAGAGATCTATGGATCCCTGAAGAGATCTTTGATTTCTAAAGAGATCTTTGGGTCCCCAAAGAAATCTTTGATTTCTAAAGAGATCTATGGATCCCTGATGAAATTTTGGATTTCTAAAGAGATCTATGGATCCCTGATGAAATCTTGGATTTCTAAAGAGATCTTTGGATCCCTGAAGAGATCTTTGATTTCTAAAGAGATCTATGGATCCCTGAAGAGATCTTGGATTTCTGACGAGATCTTTGGATCCCTGAAGAAATCTTGGATTTCTAAACAGATCTATGGATCCCTGAAGAGATCTTGGATTTCTGACGAGATCTTTGGATCCCTGAAGCGATCTTTGATTTCTAAAGAGATCTATGGATCCCTGAAGAAATCTTTGATTTCTAAAGAGATCTATGGATCCCTGAAGAAATCTTGGATTTCTCAAGAGATCTATGGATCCCTGAAGAAATCTTGGATTTCTAAAGAGATCTTTGGATCCCTGAAGAAATCTTGA
Protein Sequence: MKSWISKEIYGSLTRSWISEEIYGSLKRSLISKEIYGSLMKSWISKEIYGSLKRSLISKEIFGSPKKSLISKEIYGSLMKFWISKEIYGSLMKSWISKEIFGSLKRSLISKEIYGSLKRSWISDEIFGSLKKSWISKQIYGSLKRSWISDEIFGSLKRSLISKEIYGSLKKSLISKEIYGSLKKSWISQEIYGSLKKSWISKEIFGSLKKS

Sequence clustering based on sequence similarity using MMseqs2