Basic Information

Insect: Harpalus rubripes
Gene Symbol: -
Assembly: GCA_963082715.1
Location: OY720457.1:2227856-2241346[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0015 0.39 13.5 0.9 1 23 983 1005 983 1005 0.98

2 10 0.43 1.1e+02 5.8 2.0 1 23 1028 1050 1028 1050 0.98

3 10 0.0046 1.2 12.0 3.3 2 23 1185 1207 1185 1207 0.96

4 10 0.13 33 7.4 4.0 1 23 1213 1235 1213 1235 0.96

5 10 7.3e-05 0.018 17.7 3.2 1 23 1241 1263 1241 1263 0.98

6 10 0.00033 0.083 15.6 3.0 1 23 1270 1292 1270 1292 0.97

7 10 5.6e-06 0.0014 21.2 1.4 1 23 1300 1322 1300 1322 0.96

8 10 0.17 43 7.1 1.8 1 23 1328 1350 1328 1350 0.94

9 10 9.5e-06 0.0024 20.5 1.2 1 23 1356 1378 1356 1378 0.99

10 10 9.5e-06 0.0024 20.5 1.2 1 23 1439 1461 1439 1461 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0015	0.39	13.5	0.9	1	23	983	1005	983	1005	0.98
2	10	0.43	1.1e+02	5.8	2.0	1	23	1028	1050	1028	1050	0.98
3	10	0.0046	1.2	12.0	3.3	2	23	1185	1207	1185	1207	0.96
4	10	0.13	33	7.4	4.0	1	23	1213	1235	1213	1235	0.96
5	10	7.3e-05	0.018	17.7	3.2	1	23	1241	1263	1241	1263	0.98
6	10	0.00033	0.083	15.6	3.0	1	23	1270	1292	1270	1292	0.97
7	10	5.6e-06	0.0014	21.2	1.4	1	23	1300	1322	1300	1322	0.96
8	10	0.17	43	7.1	1.8	1	23	1328	1350	1328	1350	0.94
9	10	9.5e-06	0.0024	20.5	1.2	1	23	1356	1378	1356	1378	0.99
10	10	9.5e-06	0.0024	20.5	1.2	1	23	1439	1461	1439	1461	0.99

Sequence Information

Coding Sequence: atGCCGCATTTTACTAATGCAGAATATGCCGATATGGTTTTCGTGTATGGTTTCTGCAACGGAAGATATTCCTCTGGAAGCTCGTCGTGGATAGGACGAGGTGGTCCTGTACATTGGCCAGCTCGGTTACCTGACTTGTCGCCTTTAGATTTATTTCTGTGTATAGTAATGgtacttcAGCGTCTACGTGAAACTGGATCAACAACTGTACGGGGAGGTGTACAAAATGAAGCCATTGGTGTTAATAATAACGTTGAAGATGAAGAGAATGTAATTGATGCTGTTCTCGATAATCCTGAAATGAGCACAAGACGCATCGCTGCTCAATTACACATGTCTCACAGTACTGTTTGGCGGATATTAAACCGTGAGGAATTACATCCCTATCACTTTCAGCGAGTTCAAGCACTGCAACCCGGAGACTATGGTCCTCGTTTAGAATTTTGTCGCTGGTTTCtccgtcaaaatttaaatgatcctGACTTTATTTCCAAAGTGTTATGGTCTGATGAAGCCCAATTCACGAGAGACGGATCCCGTTTTCAGCAAAGATTTAGCATAAATGTCTGGGCAGGAATTTTCAATACTAGATTACTAGAAATTGAAGTTTTAATTGACCGATTAACAGCTGATGGCTACAGAAACTTTCTGGAAAACAGACTACATGAACTAATAGAAGATGTTCCACTTCTTGTACGACAACAGATGTGGTACCAGCATGATGGTGCTCCTCCTCACTATGGTAGACAAGTAACTGAGTGGTTAAACCAAAACTTTCCCAATAGGTGGATTGGACGTGGAGatacttcAAAAGATCAATCAACAGTTGAGGATTTGAATCAACAAAATCAATCTTTAAATAGAAAATCTACACCGTCAACCATTACGAATTCCATACCCGACCCGTCCGATGATAACGAAGAATCATCTCACGATTCCgttgataatgatgatgatgattatGTTCCTGCTGATTCCGACGAAGAAACCTCATCAGAAGACGAGGAAACTGTAgagaaaaatgAACAGTCCATACTAGCAGATCTTTTAGCCCAATCTAAGGATTTTTCAAAACTTGGAAACCAAATTGATCAGTCATTTAGAAAAGAAGATCctgcaataataattattgatgaAGATGATAATAATCAACTTTCTTCAAATTTGCtgcaaaataatatacaagaaaataataattctacTAATCATCAAGAAATTCAATCAAATATACAGGACAAATGTaatcaacaaaaaaatgattcaaataatgaaaatattaatattgatagTGAACCACTAAATTTGCCTTCAAATTCTAATGCTGCAAATGTTACCAGTATCGAACCTAGTACTTTAAATACAAATGCAGTAAACAAAAAACTATTACGGGAATTGTTACTTAATTCCAAATGTCATTTTGATTCTCTTAATAAAATTAAGGaatatgaaagtaaaaaattaaataaccaaGATATATTGTACATTGTACAAGAGAAAGATAATACAAATGATCAACAACTTCAATCAACTATGCAGGACAATTGTAATCAACAACAAATTAGTTcaaatagtcaaaatataaataataaaattaatagtgaACCAATAAAATCATTGTCTTCAGCTCCATGTGCTTCTAATCTTTCAAATTATTCTAATCTTCCAAATGATAAAAGCATTGAATCTAGTACAGTAAATAGCGAACCAAATCCTAAAAATGGGGTGAacgtaatttttttacataaattattacttaactcaaaaaatcattttgatTCTCTTAACAAACAAAGagaaaatgaaactaaaaaactaattaatcaACGGActactaatgtaaataataaacaaaataataatacacgGAACTTACgaaattttagaagaaaaactaaTAGGAATCCTACACCCGATATGTCTGATGATACCGACGAATCATCACCTGACGATTCCGGTGATggtgataatgatgatgatgatggtGATCTTTTTGTTATTAACAACAATGAAGAACTAAACAAATTAACCGCAAATGAATTAGAATCTACTACAAGAAACTTACGAAAAAAAACTACAGTATCAACTAATACAAATAGTAAACCTGTTACGTCTGATGATAGCGACAAATCACCATCTGACTATTCCGGTGATGATGATGAAGATTATGTTCCTTCTGATTCTGATGAAGAAATTTCTTCAGAAGAAGAAATGGAAGAGGCAAATATACAAACAGTTGCCAACATACCACAAAGTAATTCTAGTGCTACTAACATCACATTGGCTAACAAACCTTGTGAAGAAATTATGGTACGTACTGATCATCTTGaaagttacaacaaaaattgtGCAGAAAACAATGTAcaacaaataccatctttaaTTAATGATACTAAACGAAAAACAGaaacaaataacaaacaaaCAGCAAGTGAAGGTGGTGAAGGATCATCCAAAGATTCCAGTGTTGTTttcgaaaattataataaaatttgtgcgCAAAACAATGTACAACAATTATCATCTTTAACTGAAGATAATTCTAAAGGAAACACAGAAACCAATAACGAAAAAACACCAGTTATTGAGGGTGATGGAGAATCTTCTAAAAATTCCAGTGATGAACAATCAAGTTCTTCACTAAATAAGATTAAAGAAAAGGATAATACTCAAGTTAATACTGTTATACAACAtacaaacaaagaaaataaaactgttAACAACGTTTCTTcaacaaataatgaaaaaacaacaataactGAAGATGGAAAAGAATCTTCAACAAATTCCAACAATATACTTGTAATTTCCGATGAAGAATCTGGTTTAGGAAATAAtactaaagaaaataataatactcaATCTAAAACTGCCagcaaagaaaataaaactgttAATAGAGTTTATTCAACGATTTACAATAAAACCAATCATACCAAAGTTTCATCATATAAATGCGacgtttgtaaaaaattatttaatagttataCATCACTAGATGAACATTTGCAAGTACACGTGGCagatcaaaatacatatgttatCAAACAACTGTCTTCTCCTGATGACGACATACCAAAAACATACAAATGTCCACTTTGCAAGGACACTTTTGATTTTGCGTTAGTATTAAAAAATCATCTTAAGCATCACGCCTTTTTTTCGGGAGGTTTGAATCCAAAGCAAATGGTTTttaattcatttcatattaataaattaaaaaataagctTCGTATACCTTTCACATCAGATGATGGCATTGAAGATATCATAACCACAGTTCACTGCCATGTGGATGATATTGAAAAAACCACTTCAGCCTACcaaactataattaaaaaacTTTATAACCACATAAAAAATCCAAATATTGAAAAAGACTATAtgagtttaataaaaataattttatgccTTTATACTATTGACATAATAGATGAAATTATGGAATTAACAAAGTCAGATAAAAACGATGAAACAGAATGTCCAGTGAAAAAATGTGAGTTTTCTTCCACACGTCATTTTATGAGTTTCCACATGTTGGAACATAGGAAGAATAGATGTCCCAAGTGCTTCAAGGAAACCAAAAAACCAGAAGAATTGCAGAGGCATATCAAGCATAAGCACCAGAACTACAAGGGGTTCCAATGTAAAAAGTGTGGCAGAAAATATCGATTCGAGATGTACTTAAAgTTTCACGAACAAACCCATGTGAGTACTGGTCCGTATCATTGTGAGATCTGTAAGCGAACATTCATTTTCAATTCCAATTACCTTCAGCACATGATTACGCATGACGAAAATAACAGAGTTCACTCTTGTGAAGTCTGTGGAAAGAAATTCTTTACAAAAATTTCTCTCTTTGCCCATTCAAAAACCCATACGACTGTTCGGAAGACTAGCTTCGAATGTGATATATGTGGCAAAAAGTTTAAGCGCTCTGCAAATTTATATcaacataaatttatccacaatgGCAAAAAGAGATTCGAATGTGCCACTTGTGGCAAGAGATTCTTATGGAAGACGCATTTGAAGCAACATGTTGTAACGCACATGGATGTCAAAGCGTATCAGTGCTACATTTGTCAGAAAGGTTTTAGAGATGGTACTTCGCTTAAGAGGCATATAAATACACACGTCAAACAGaagaaaaataaacagaaaagaAAGAGAAGAAATGAAGCAGAAACATCAAACAATGAATCACAAATATCTACAGAAGAGGAAGATAATTCTAAAGATGAAACAAATCAGACAGACGATAATAATACATTGCATTTGAAGCATCATGTTGTAACACATATGGATGTCAAAGCGTATCAGTGTTACATTTGTCAGAAAGGTTTTAGAGATGGTACTTCGCTTAAGAGGCATATAAATACACACGTCAAACAGAcgaaaaataaacagaaaagaAAGAGAAGAAATGAAGCAGAAACATCAAACAATGAATCACAAATATCTACAGGAGAGGAAGATAATTCTAAAGATGAAACAAATCAGACAGACGATAATAATACACGCTCCAGAAGGAAGAGAAAGAAACGCAGAAAAGCAGAAACATCAAACAATGAATCACAGAATGCGTCAGGTGAGGAAGACGATAATAATGAACACTCcaaaaacaagaaaaacaaaCAGAAAAGAAAGAAACGAAAAGAAGCAGAAACATCAAACAATGAATCACAAATTTCTTCAGGAGAGGAAGGCGAGAATTCCGAAGATGAAACAAATCAAGAAGAAGATAATAATACACCCACCAACAAGAAGAAAATTCAACAGAACAGGAAGAAACGTAGAAAAGCCGAAACATCAAATGAATTGCATAATTCTTCAGAAGAGGAAAAAGGAAATTACGAGGGCGATAAAAATACACGCTCCAAGCAGaagaaaaataaacagaaaagaAAGAAACGAAAACAAGCAGAAACATCAAACAATGAATCGCAGAATTTGTCAGAGGAGGAAGAAGACAATTACGATAATAAATCAAATGAGGAAGACGATAATAATAAACGCcccaaaaagaaaaacaaacataaaataacTAAACGAAAAGAAGTAGAAACATCAAATAATGAATCGCAGAATTCTTCTGGAGACGAAAAAAATTGCGAAGATGAATCAAGTGAGGAAGATGGCATACTGTTAAGCAATTTATTACAACCGAATACATCAAAAGAAAACTCAGATAACGAAACAAATAACACGAAAACGGTAGAAGAAAATTCGGAATCATCCACGATGAACGAAGACAAAGAATCAAACAATTTATCAGAGAATGCCAGAGAAAATATACAAGAGAAAACTATAGAAAACAATAAAGacgatgaaaaaataaaaatttgtaaatctccaacaaaaaataaaaatgaacaagaTATACCTATAAAAGCAGTTGAATTGGAATCAACGTCAATTTCTTCACCGGCGAAAGATGAAAACGAAATAATAGATTCCATAAATAAAACCGAAAAAGGTACGAAACCATTAGAAGACAATTTGGAAACAACAAAAGTAGaatcaaaatcaaattgttCACCGCAAAAagaggaaaagtctaaaaaagATATTGAAGAGATTGACAAGTCATTCGGGAGTAAATCAATATCATTACCCATAACAGAAAGActtgagaaaaatataaaaacaacagAAGAAATATCTGAACCAGCAAAATAA
Protein Sequence: MPHFTNAEYADMVFVYGFCNGRYSSGSSSWIGRGGPVHWPARLPDLSPLDLFLCIVMVLQRLRETGSTTVRGGVQNEAIGVNNNVEDEENVIDAVLDNPEMSTRRIAAQLHMSHSTVWRILNREELHPYHFQRVQALQPGDYGPRLEFCRWFLRQNLNDPDFISKVLWSDEAQFTRDGSRFQQRFSINVWAGIFNTRLLEIEVLIDRLTADGYRNFLENRLHELIEDVPLLVRQQMWYQHDGAPPHYGRQVTEWLNQNFPNRWIGRGDTSKDQSTVEDLNQQNQSLNRKSTPSTITNSIPDPSDDNEESSHDSVDNDDDDYVPADSDEETSSEDEETVEKNEQSILADLLAQSKDFSKLGNQIDQSFRKEDPAIIIIDEDDNNQLSSNLLQNNIQENNNSTNHQEIQSNIQDKCNQQKNDSNNENINIDSEPLNLPSNSNAANVTSIEPSTLNTNAVNKKLLRELLLNSKCHFDSLNKIKEYESKKLNNQDILYIVQEKDNTNDQQLQSTMQDNCNQQQISSNSQNINNKINSEPIKSLSSAPCASNLSNYSNLPNDKSIESSTVNSEPNPKNGVNVIFLHKLLLNSKNHFDSLNKQRENETKKLINQRTTNVNNKQNNNTRNLRNFRRKTNRNPTPDMSDDTDESSPDDSGDGDNDDDDGDLFVINNNEELNKLTANELESTTRNLRKKTTVSTNTNSKPVTSDDSDKSPSDYSGDDDEDYVPSDSDEEISSEEEMEEANIQTVANIPQSNSSATNITLANKPCEEIMVRTDHLESYNKNCAENNVQQIPSLINDTKRKTETNNKQTASEGGEGSSKDSSVVFENYNKICAQNNVQQLSSLTEDNSKGNTETNNEKTPVIEGDGESSKNSSDEQSSSSLNKIKEKDNTQVNTVIQHTNKENKTVNNVSSTNNEKTTITEDGKESSTNSNNILVISDEESGLGNNTKENNNTQSKTASKENKTVNRVYSTIYNKTNHTKVSSYKCDVCKKLFNSYTSLDEHLQVHVADQNTYVIKQLSSPDDDIPKTYKCPLCKDTFDFALVLKNHLKHHAFFSGGLNPKQMVFNSFHINKLKNKLRIPFTSDDGIEDIITTVHCHVDDIEKTTSAYQTIIKKLYNHIKNPNIEKDYMSLIKIILCLYTIDIIDEIMELTKSDKNDETECPVKKCEFSSTRHFMSFHMLEHRKNRCPKCFKETKKPEELQRHIKHKHQNYKGFQCKKCGRKYRFEMYLKFHEQTHVSTGPYHCEICKRTFIFNSNYLQHMITHDENNRVHSCEVCGKKFFTKISLFAHSKTHTTVRKTSFECDICGKKFKRSANLYQHKFIHNGKKRFECATCGKRFLWKTHLKQHVVTHMDVKAYQCYICQKGFRDGTSLKRHINTHVKQKKNKQKRKRRNEAETSNNESQISTEEEDNSKDETNQTDDNNTLHLKHHVVTHMDVKAYQCYICQKGFRDGTSLKRHINTHVKQTKNKQKRKRRNEAETSNNESQISTGEEDNSKDETNQTDDNNTRSRRKRKKRRKAETSNNESQNASGEEDDNNEHSKNKKNKQKRKKRKEAETSNNESQISSGEEGENSEDETNQEEDNNTPTNKKKIQQNRKKRRKAETSNELHNSSEEEKGNYEGDKNTRSKQKKNKQKRKKRKQAETSNNESQNLSEEEEDNYDNKSNEEDDNNKRPKKKNKHKITKRKEVETSNNESQNSSGDEKNCEDESSEEDGILLSNLLQPNTSKENSDNETNNTKTVEENSESSTMNEDKESNNLSENARENIQEKTIENNKDDEKIKICKSPTKNKNEQDIPIKAVELESTSISSPAKDENEIIDSINKTEKGTKPLEDNLETTKVESKSNCSPQKEEKSKKDIEEIDKSFGSKSISLPITERLEKNIKTTEEISEPAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -