Basic Information

Insect: Harpalus rubripes
Gene Symbol: -
Assembly: GCA_963082715.1
Location: OY720465.1:31367477-31387288[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0014 0.36 13.6 0.3 1 23 75 97 75 97 0.99

2 8 4e-06 0.001 21.6 4.3 1 23 103 125 103 125 0.97

3 8 1.5e-05 0.0038 19.9 2.4 1 23 131 153 131 153 0.98

4 8 1.4e-06 0.00035 23.1 1.0 1 23 159 181 159 181 0.97

5 8 0.63 1.6e+02 5.3 6.2 1 23 187 209 187 209 0.98

6 8 8.3e-05 0.021 17.5 4.9 1 23 219 241 219 241 0.98

7 8 5e-07 0.00013 24.5 3.0 1 23 247 269 247 269 0.99

8 8 0.45 1.1e+02 5.8 0.2 1 10 691 700 691 705 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0014	0.36	13.6	0.3	1	23	75	97	75	97	0.99
2	8	4e-06	0.001	21.6	4.3	1	23	103	125	103	125	0.97
3	8	1.5e-05	0.0038	19.9	2.4	1	23	131	153	131	153	0.98
4	8	1.4e-06	0.00035	23.1	1.0	1	23	159	181	159	181	0.97
5	8	0.63	1.6e+02	5.3	6.2	1	23	187	209	187	209	0.98
6	8	8.3e-05	0.021	17.5	4.9	1	23	219	241	219	241	0.98
7	8	5e-07	0.00013	24.5	3.0	1	23	247	269	247	269	0.99
8	8	0.45	1.1e+02	5.8	0.2	1	10	691	700	691	705	0.90

Sequence Information

Coding Sequence: atggcGGAACCATGCGGTTCTTTAGACACTCACAACGATAATTGTACAACAGAAGAAACAAAAGTTCAGAATATTGAAGAAATATACATCAAAATGGAACCCGTGGAAGACACATCCAGTGATAGTGACTCTTCggatgaaaatataaataacctTGAATTTAGTGACAGTGCGCAAGACATAACCAAAAATTCAATCGATTCAGAAACAAGTTCTAAAACATATAAGTGTTCCCAATGCGACTTGAGTTTTCCATGGCCAGCTTGGTTAAAAACACATTCCAAAACTCATGACAAATCCCTTCAACATCCATGTACAGTTTGCAACAAACTTTTTACTCAAAAATTCAACTTGAGACAACACATGAAAACTCATACGGGCACAAAAGATTTTGAGTGTAGCATATGTGGAAAAAAATCAACAACCAAACAGCAGATGAAATaccacatgcaaacacacactGGAATAAAACAATTTCAGTGTAACATATGTAACAAGTTATTTACTAGAAATGAAACGTTAAAGAGACACATAGAAGGCCATTCTGGCAAGAAGGGATTCCAGTGTTTAATATGTCTGAAATGGTTCACACAAAAACATCACATGATCTACCACAAACAGAGACACACTGAACCTGATAGTTCGCTGAAGAAGTTTCAGTGTAATTTATGCCAGAAAAAGTTTTTCAGACAACAACACCTCAAGGATCATGTGGAAACTCATATTGATACAAAGGAGTTTAAGTGTACCTTGTGTGGGAAGTTGTTTTCGCGAAGACCTTATTTGAAGAAACACATGAAAACTCATTCAGAATTGAAGGAGTTTCAATGCAATCGTCAATTTGGGCGTTCGGGCGAATCTGTTCCACTTGTGAAGAAAATCTCTACTCCTTTCGTAAATTTAAACAAGCCCACAAGATCATACAACTCGAAAATGGACGACATTTACGTTAAAGAAGAACCTTTACAAGACAATTTCAGTGTTTATGAATTTGTTGATGACATAGACATAAAAGAAGAAGCTCCCCTTACATTTTGTACGGACTTTGCTCAAGAAAACTCAACCAAAATGTGCATTGCTAGTGACAATCAGCTACAGACAAATATGGCAGATGATACGAAGGATATTGTGACACTAGAAACAAATACTGGAAATTTTGAAGAGATATTTGTTAAAGAAGAAAGTGCAGACGGTCAAGTTTCCTTTGACCTTGGACGGGTTTTAActggaaaagaaaaatattgtcaCATAACCAAAGAAAATTCAATCGAGAGTAATTCTATACAAATAGCTACAAATACAGATATTTTGACTACTGAAAGTACAAGTGaagatataattattaaagaagaAACTGCAGAACGTGAAGATTATATTGACGTAACCAAAAAAGATTCACCCGAAAAAATAACTACGAATACTGATATTTTAACAACTGAAAGCAATCGTCAATTTGGGCGTTCGGGCGAATCTGTTCCACTTGTGAAGAAAATCTCTACTCCTTTCGTAAATTTAAACAAGCCCACAAGATCATACAACTCGAAAATGGACGACATTTACATTAAAGAAGAACCTTTACAAGACAATTTCAGTGTTTGTGAATTTGTTGATGACATAGACATAAAAGAAGAAGCTCCCCTTACATTTTGTACGGACTTTGGTCAAGAAAACTCAACCAAAATGTGCATTGCTAGTGACAATCAGCTACAGACAAATATGGCTGATGATACAAAGGATATTGTGACACTAGAAACAAATACTGGAAATTTTGAAGAGATATTTGTTAAAGAAGAAAGTGCAGACGGTCAAGTTTCCTTTGACCTTGGACGGGATTTAActggaaaagaaaaatattgtcaCATAACCAAAGGAAATTCAATCGAGAGTAATTCTATACAAATAGCTACAAATACAGATATTTTGACAACTGAAAGTACAAGTGaagatataattattaaagaagaAACTGCAGAAAGGGAAGATTATATTGACCTAACCAAAAAAGATTCAACCGAAAAAATAactacaaatattaatattttatcaacTGAAAGTACAAGTACAGAAACGCATACTTGTTCAATATGTAACAAGAATTTTCCCTGGAAATCTTGGCAATCGTCAATTTGGGCGTTCGGACGAACCTGTTCCACTTGTGAAGAAAGTTTAGTAATTTTAAACAAGCCCACGAGACCAAGATATATACAACAAGAAAATGGACAACATTTACATTAA
Protein Sequence: MAEPCGSLDTHNDNCTTEETKVQNIEEIYIKMEPVEDTSSDSDSSDENINNLEFSDSAQDITKNSIDSETSSKTYKCSQCDLSFPWPAWLKTHSKTHDKSLQHPCTVCNKLFTQKFNLRQHMKTHTGTKDFECSICGKKSTTKQQMKYHMQTHTGIKQFQCNICNKLFTRNETLKRHIEGHSGKKGFQCLICLKWFTQKHHMIYHKQRHTEPDSSLKKFQCNLCQKKFFRQQHLKDHVETHIDTKEFKCTLCGKLFSRRPYLKKHMKTHSELKEFQCNRQFGRSGESVPLVKKISTPFVNLNKPTRSYNSKMDDIYVKEEPLQDNFSVYEFVDDIDIKEEAPLTFCTDFAQENSTKMCIASDNQLQTNMADDTKDIVTLETNTGNFEEIFVKEESADGQVSFDLGRVLTGKEKYCHITKENSIESNSIQIATNTDILTTESTSEDIIIKEETAEREDYIDVTKKDSPEKITTNTDILTTESNRQFGRSGESVPLVKKISTPFVNLNKPTRSYNSKMDDIYIKEEPLQDNFSVCEFVDDIDIKEEAPLTFCTDFGQENSTKMCIASDNQLQTNMADDTKDIVTLETNTGNFEEIFVKEESADGQVSFDLGRDLTGKEKYCHITKGNSIESNSIQIATNTDILTTESTSEDIIIKEETAEREDYIDLTKKDSTEKITTNINILSTESTSTETHTCSICNKNFPWKSWQSSIWAFGRTCSTCEESLVILNKPTRPRYIQQENGQHLH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -