Basic Information

Insect: Harpalus rubripes
Gene Symbol: -
Assembly: GCA_963082715.1
Location: OY720466.1:17733761-17734747[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0005 0.13 15.1 1.3 1 23 30 52 30 52 0.98

2 7 0.023 5.8 9.8 4.1 1 23 58 80 58 80 0.97

3 7 2.9e-05 0.0073 19.0 6.1 1 23 90 112 90 112 0.99

4 7 6.4e-06 0.0016 21.0 8.5 1 23 118 140 118 140 0.98

5 7 0.00018 0.046 16.4 2.4 1 23 147 169 147 169 0.97

6 7 4.3e-06 0.0011 21.5 2.9 1 23 175 197 175 197 0.98

7 7 4.5e-06 0.0011 21.5 0.3 2 23 237 259 237 259 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0005	0.13	15.1	1.3	1	23	30	52	30	52	0.98
2	7	0.023	5.8	9.8	4.1	1	23	58	80	58	80	0.97
3	7	2.9e-05	0.0073	19.0	6.1	1	23	90	112	90	112	0.99
4	7	6.4e-06	0.0016	21.0	8.5	1	23	118	140	118	140	0.98
5	7	0.00018	0.046	16.4	2.4	1	23	147	169	147	169	0.97
6	7	4.3e-06	0.0011	21.5	2.9	1	23	175	197	175	197	0.98
7	7	4.5e-06	0.0011	21.5	0.3	2	23	237	259	237	259	0.97

Sequence Information

Coding Sequence: atggcaGACATTTTTGTCAACGAACATGAACTTATCTCGGAAGAACAACCGATGGACCTTGACAATATACATGAAGGAATCAAAGATTTTCGTTGTAATTTGTGTAACGAATTGTTTGGTGACAAATTCAAACTGAAATACCACATGGCAAGTCATGCCGGTAAAACAGAATGCAAGTGTGATATATGTCACCAGTTATTGCCAAATAATAATACcctaaaatatcatttaaacaCTCATATCGATAGAGATGGTAATTTAAAGCAGTATCAATGTAGCCTGTGTCACAAATTATTCACGTATAAACACAGTTTGAAAGAACACATGAATATCCATAATGGTATAAAACCATATGAATGCACAACGTGTCATAAGTCGTTTACGAAGAAAAGTCACCTGAAGAAACATTTTAATGTGCATAATGGAAGCAGTTGGGAACATATGTGTACTATTTGTATCAGGCCTTTTAAACGTAAAAAATCTTTGGAATATCATATGCGGGCCCATGAAGGTATAAAAGATTTTGAGTGCCCAAAATGTCATAAGACATTTGCTGCAAAAAATTACCTGACCAGACATTTAAAATTGCATGCATTGAATGACCAGGCACTTATTTCAAATCAGATGCACGCAGATAACACTGACATTAGTCTGGCAGAAGATATCAACAAGATTAAGGAAAAATGTAAAGAAGAAGAGAAAAAAAGACAGTGTCCTATTTGCGGTAAAATATTTTCACTGCGCAATAATATGGTAAGACATTTAAGAAATGTACATAATGGAATCAAAAATGATTGTAATATGACACTAGAAAACATTGAAGAAATATTTCTTAAAGACGAACAGTTTGAAGTAACTCCTTATGAACATGAACTTTATAAAACTAGTGTATCGGAAATAAGTGATAATAAACTTGAAGAGACTCTCATTAAGGAAGTACCGAAGGAAGACAGCTACATGGAATCTAAAGATTACAATATGTACTGA
Protein Sequence: MADIFVNEHELISEEQPMDLDNIHEGIKDFRCNLCNELFGDKFKLKYHMASHAGKTECKCDICHQLLPNNNTLKYHLNTHIDRDGNLKQYQCSLCHKLFTYKHSLKEHMNIHNGIKPYECTTCHKSFTKKSHLKKHFNVHNGSSWEHMCTICIRPFKRKKSLEYHMRAHEGIKDFECPKCHKTFAAKNYLTRHLKLHALNDQALISNQMHADNTDISLAEDINKIKEKCKEEEKKRQCPICGKIFSLRNNMVRHLRNVHNGIKNDCNMTLENIEEIFLKDEQFEVTPYEHELYKTSVSEISDNKLEETLIKEVPKEDSYMESKDYNMY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -