Basic Information

Insect: Harpalus rubripes
Gene Symbol: erm
Assembly: GCA_963082715.1
Location: OY720458.1:7857313-7858656[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 5e-06 0.0013 21.4 0.5 1 20 201 220 201 223 0.93

2 6 7.7e-07 0.0002 23.9 1.6 1 23 229 251 229 251 0.97

3 6 8.8e-07 0.00022 23.7 5.7 1 23 257 279 257 279 0.98

4 6 1.3e-05 0.0032 20.1 3.2 1 23 285 307 285 307 0.98

5 6 0.005 1.3 11.9 6.0 1 23 313 335 313 335 0.99

6 6 3.4e-06 0.00085 21.9 4.0 1 23 341 364 341 364 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	5e-06	0.0013	21.4	0.5	1	20	201	220	201	223	0.93
2	6	7.7e-07	0.0002	23.9	1.6	1	23	229	251	229	251	0.97
3	6	8.8e-07	0.00022	23.7	5.7	1	23	257	279	257	279	0.98
4	6	1.3e-05	0.0032	20.1	3.2	1	23	285	307	285	307	0.98
5	6	0.005	1.3	11.9	6.0	1	23	313	335	313	335	0.99
6	6	3.4e-06	0.00085	21.9	4.0	1	23	341	364	341	364	0.98

Sequence Information

Coding Sequence: ATGCAACCGTACCAGGCCGGAGGCCAGGCGAGCGGAGCTAGCGGAGCGATGGCAACGGACGAGGCGGGGGCCGCCGCGGCGGAGACGGCGATTAGCGCGACGGCAGCGGCGGCCGAGACGCCGTGTTCGCGTCCTCTCAACTTCTCCATCGCACGCATCATGGAACCGGATCGCAACCGCGACCGCGACCGCTGCCGACCCCGCAAGGATCACTCCCAGCCCCAGCCCACTCTGCCAAACCAGCTACATCAGTACAGCGCTCAGCTTGACTCCGCGTTCAAGAAGTACGTGCCATCTACAGCTTTCCGTAGCGTGCCGCAAGACCTGCTGCACGGCTATCCGCTCCTATACTACCACCCTGGGCAGCTAATGTGCGTGGCTGCTGCTGCTGCCGCTGCCAGCTACGCGCTGCCCTCATCCCCCGTGGCTACAGTGTCCGCGGCCTCCGACGTCGCTGCCGCTGCAGTCAGTGTCGCTGTAAGTGACGTAAAACGCGCAAACACAGACTTGGAACCAGTGCCGCAGCCACAATCCAACCAGCAGCAACCACCCCAAAGCAACCACCAGCAATCCGTCGCCGTCGGCAAGCAACAAAAAAGTTTCGAATGCGGGGAGTGCGGCAAAGTGTTCAACGCGCATTACAACCTCACGCGACACATGCCCGTGCACACGGGGGCGCGACCTTTCGTTTGCAAAGTTTGCGGCAAGGGGTTCCGGCAAGCGTCCACGTTGTGCCGTCACAAAATCATCCACACGGCTGAGAAACCTCACAAGTGTCACACGTGCGGGAAGGCGTTCAACAGGTCCTCCACGCTCAACACGCACACGCGGATTCACGCGGGGTACAAGCCGTTCATCTGCGAATACTGCGGCAAGGGCTTCCACCAGAAAGGCAACTACAAGAACCACAAACTGACGCACAGTGGAGAGAAGGCATACAAGTGCACGGTGTGTTCGAAAGCGTTCCACCAGGTTTATAACCTGACGTtccacatgcacacgcacaacGACAAGAAGCCGTTCACGTGCAGAGTTTGTGGGAAAGGATTTTGTAGAAACTTCGACCTGAAGAAACACGTGAGAAAGCTGCACGATTCAGGGGGAGTGCACCAGCAGCATGGGCATGGGCAGGGGCACGGACACGGGGAGTACGGCGCTGAGGGGGCTAGTCACCATGGTATGAGCGCTGGTGCAGCGAGCGGCGCGCACCACTTAGCATTCGTGAGCCCTTTCCTGCTGCCGCCGCCACCACAGCACCATCACCAACACGCGGTGTCCGCCGTGTCGGCAGCAGGGACTCACGCACCTCTACCTGTTCCCGTGTACGCTGCCAAGATTTTGTGA
Protein Sequence: MQPYQAGGQASGASGAMATDEAGAAAAETAISATAAAAETPCSRPLNFSIARIMEPDRNRDRDRCRPRKDHSQPQPTLPNQLHQYSAQLDSAFKKYVPSTAFRSVPQDLLHGYPLLYYHPGQLMCVAAAAAAASYALPSSPVATVSAASDVAAAAVSVAVSDVKRANTDLEPVPQPQSNQQQPPQSNHQQSVAVGKQQKSFECGECGKVFNAHYNLTRHMPVHTGARPFVCKVCGKGFRQASTLCRHKIIHTAEKPHKCHTCGKAFNRSSTLNTHTRIHAGYKPFICEYCGKGFHQKGNYKNHKLTHSGEKAYKCTVCSKAFHQVYNLTFHMHTHNDKKPFTCRVCGKGFCRNFDLKKHVRKLHDSGGVHQQHGHGQGHGHGEYGAEGASHHGMSAGAASGAHHLAFVSPFLLPPPPQHHHQHAVSAVSAAGTHAPLPVPVYAAKIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01105060; iTF_00769126;
90% Identity: iTF_01105060;
80% Identity: -