Hrub049406.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- -
- Assembly
- GCA_963082715.1
- Location
- OY720457.1:43386928-43391420[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.76 1.9e+02 5.0 1.8 1 22 306 327 306 329 0.88 2 17 1.5 3.8e+02 4.1 0.3 1 23 359 382 359 382 0.93 3 17 7.5 1.9e+03 1.9 0.2 1 23 406 429 406 429 0.90 4 17 0.027 6.8 9.6 0.6 1 23 599 622 599 622 0.88 5 17 1.7 4.3e+02 3.9 2.3 3 23 695 715 693 715 0.91 6 17 0.0016 0.41 13.5 2.6 1 23 718 740 718 740 0.96 7 17 0.0021 0.52 13.1 0.2 3 23 750 770 748 770 0.91 8 17 5e-05 0.013 18.2 4.6 2 23 777 799 776 799 0.96 9 17 0.55 1.4e+02 5.5 2.7 3 23 804 823 802 823 0.94 10 17 0.00013 0.033 16.9 5.8 1 23 829 851 829 851 0.99 11 17 0.0031 0.78 12.6 0.2 3 23 860 879 858 879 0.96 12 17 0.00026 0.065 16.0 3.8 2 23 886 907 886 907 0.97 13 17 1.5 3.9e+02 4.1 1.4 1 23 914 937 914 937 0.94 14 17 4e-06 0.001 21.6 1.0 1 23 952 974 952 974 0.98 15 17 0.00047 0.12 15.1 1.1 1 23 980 1002 980 1002 0.98 16 17 4.3e-06 0.0011 21.6 5.2 1 23 1010 1032 1010 1032 0.99 17 17 1.1e-05 0.0027 20.3 0.1 1 23 1038 1060 1038 1060 0.98
Sequence Information
- Coding Sequence
- ATGAACGCCAAATACGTTAAATGTGCAGCAAAATGCTGTGGTAACACTTTATTAGACAATTCCAATTTAACGTTTTTTACTTTTCCCGAAAATACTGAGTTAGCAAAAATATGGGCTAATAACGCAAAAGTTTCGTATTATTACTATGGGTCAACTTTGTGTTCTGATCATTTCGAAGACAAATTCTTCAATCAAAATTTTGGGAAGAGGTCTGTTTTCCGTCAAGACATGGAGCCTATCCCtacaatttttaacattaaaaacaaaaatgatggGGTCACTCTTATTCCAACAGTCATTACAGACAATAAAAAAGATGGGGTCACTTCTATTCCCAAAGTCACTTTGGTGGATCCCGCTAAAATCATCAATCAACCATCAGatCCTGTACCAATTTTGAAGGAATATTGCCGACTATGTGCTAACTTATTTCCTATAAAGAACATGAAtaccattttcttcaaatataatgaaatgatTGAGACTTGCCTTCCAGGAAAGGTGTTTCAAAACGACCCACTATCCCAATATATTTGTCTTTTGTGTAGTCATAAAGTAAAAGAGTGTGCAAAAATGCTTAAAGTGTTTCAAGAGGCCGACAAAAAACTTCATGAAATGCTCAATCCAAAATCGGTGACACAGAAACTACCTTCAACTTCAACATCTAAAGAAGCAGAAGTTATTAACATTTCcgacgatgatgatgatgatgttgATGATGACGACGACGACAACTCGGCTAACTTTAACGAAAAAGACCTGTTAGATGATTTAATGAACGTTTTAACGGAAACGAACAACATTTTAGACGAAATCGCGAATGATCCTTTAAACATCTCAGATAATGAAGAGCCCGAATCTCCACCGGTCaaaataagaaagaaagaaaattaCGAAACTAAACTTAAATATCGGTTCCAATGTTTAAAGTGCTCCAAGCTCTTTGATTATAAAGAACAGGTACTTGTTCATGCGTACCATGAACATCCGTACAATAGAAACGATAAAATTATATCGCGAATCGTTCCCCAAAAAGTTCAAGAATTAAAAGTCGAGCCCCCCAGAATTATAAAGTACCAGTGCGTAGCTTGTAATATAATTTACGACACAAAAGATGAGATTTTCAATCATTCTAGTAGTTTTCATAATGGGAATAAAACTGTGTCTAAAATCATAGAAGTCGCTGAAATCCCGCAAAAaacattaacaattaaatatatgtGCTTGTCTTGTCCGACTGTTCGTGAAACTCAATTAGAAATGAGGCGTCATGCATCTTTGTATCACTCAAACACTAAAATTATTTCGAAGGCAATAATTTGTGACAAAGAGTTCTGTGAAAATGCCCCAGTTATTAACAATTCACCATTTATGAAACAAGTAAAAGCAAAAGATTATAAAGGACCCAGTTCAGACATTAAAAACTACCATTCTCTGTTTAATGAACACGGCATTGGCAGTGCAGATCATTTCCATGCGTTATACGCTCGAAAACCAAAACCTGATGTCCCTCTTATCAAATATAACGTTAAATACAAATGCAGTTCATGTTCAGAGATTCGAGATTCGTATAACGAAATTTACGAGCATTTCGAAAAAGAACATTCGAATCCAGTCGAACAAACAGATCCTATCGCGATAGTTTGTAAAGTGAACGAAGATTGCGACCTTTCAGTTGACAATAACCCAGACTATGTCATACAAATTAACGATGGAACAATTACAAGCATAGATCCTTCGGAAAAACaagaaagattaaaatattcagAACCGAAATTAATTCCAGAACCCGGTTTCAAATGTCTGGATTGCAATAAAATTTACAGAACCAAACAAATTTTAGTCAAACACGCGTTAGCCAAACACCCAAATGAACTCAACGAAATCAATTGCAAGCAAGTAACAGTTCAGCGAAGAGTCGACTCCACCAAAGGCAAAAACAAATTTGAATGTTTAACATGCAGCACATTGCACATTTCCAAATTTTCCCTCTTGCGACACACAGAACTCCTCCACCCGAATatcagtaaaaataaattcttataCCGGTTCTTAGAACACCAAAAAAGAGGACCAATTCCATGCTTGCGCTGTAGTTTCAGCCCAAAAACTTTTTCACAATATTGTAACCACATTAGAACTCACATATGTTTCAACTGCAAAGAGTGCGACAAGAAATTTGTCAAAGTACACTTATTAAAAGAACATGAAAAAGAACATAATCCCACTGATAACAACACGTGGACATGTATTGTATGTGATGAAGAATTCACAAACAAATCACTATTATTGAGGCACGAATACACACATAAAACACTTAAAGACGTTCAATGTTCcaaatgtaacaaaaaattcACCTCTGAATATCATCTCAAAAAACATGAAAAAAAGGTGCACGAGACTTGTTTGTGCGACATCTGTGGAAAGACTTACGAATTACCGTATATCAAACACCATTTGCAAACGCACAACACAGATTGTCCTTTCAAATGTAAACACTGTTCAAAAACGTTTAAGACTGCTGGTATATTGTTCCGCCACCAAAGAAAACACTATACCACAACCGAAAAAACTATCTGTCAAATCTGTGGCAAAGTCATAGGTCGGTCTTCACTCACGTTGCATATGAAAACGCATTCCACTGAAAAAGACGAAGTTTGTGACATTTGCGGCGCTTCTTTCCACAGACGAGACCACTTGCGACAACACAGATCTAGACACGAAACCGGAGAACGCACATATGACTGTGTACACTGCTTGACAATTCTATCTAGCAAAAAATCTTATTTACAGCACTTGTCAAATGTGCACGGAATAAATCAAAACGATTTCCCAGCATCCGAGAAAAAGAAATTCCAATGCACTATCTGCGACAAACGATTCCCGTCTAAAACCTATCTTGCCGATCATTACCGCTGGCATAGAGGAGAAAAAATTTACTCGTGCGAAACTTGCGGAAAGACTTTCGGGACTAAAATCTCGGTTTATCAACACAAACTAACACATTTGCCTTACGAACAGTTCAAGTATGAATGTAATATATGCCATAAGCGATTTAAAAGAAATGAGCAATATCGAAACCATAGAAGAGTTCACACTGGAGAAAAACCGTTTCCGTGTCCAATCTGCCAGCGACCTTTCCGCGTTCGCGGCGAAATGGTGAAACATATGCGAGTACACACGCCCATAGAGAATAGAGACATCAGATATAAAGTTAAAACTAAACCAAAAGAAACACCAACTCCCATAATCACTCAAAGAACTTTAGAAACCGTTCCGCCCGCAGTTATTAGAACTAAAACCAAACCAAAAGGAACACCAACTTCCATAATCACTCAAAGAACTTTAAAACCTGTTGGTCCCGCAGTTATTAGAACATATGTTCGCCCGAAAATACAAACTGTTGTTCGACCCGctgtaaatataaaacctaaagATACTGACATTGAAcctgtaaatataaatactgataatatttttgaaagtaacAATGTTCTTCGCACTAAGAATGTTAAAATAGCTAAAGTGAAGACTAGTCtaaatcaaactattttctatatTGATGATAGTTCGTCGGGTTCCGCATCCGCAGAAGAAGTGGGAAAACATATGCCCAATCTAGAATAA
- Protein Sequence
- MNAKYVKCAAKCCGNTLLDNSNLTFFTFPENTELAKIWANNAKVSYYYYGSTLCSDHFEDKFFNQNFGKRSVFRQDMEPIPTIFNIKNKNDGVTLIPTVITDNKKDGVTSIPKVTLVDPAKIINQPSDPVPILKEYCRLCANLFPIKNMNTIFFKYNEMIETCLPGKVFQNDPLSQYICLLCSHKVKECAKMLKVFQEADKKLHEMLNPKSVTQKLPSTSTSKEAEVINISDDDDDDVDDDDDDNSANFNEKDLLDDLMNVLTETNNILDEIANDPLNISDNEEPESPPVKIRKKENYETKLKYRFQCLKCSKLFDYKEQVLVHAYHEHPYNRNDKIISRIVPQKVQELKVEPPRIIKYQCVACNIIYDTKDEIFNHSSSFHNGNKTVSKIIEVAEIPQKTLTIKYMCLSCPTVRETQLEMRRHASLYHSNTKIISKAIICDKEFCENAPVINNSPFMKQVKAKDYKGPSSDIKNYHSLFNEHGIGSADHFHALYARKPKPDVPLIKYNVKYKCSSCSEIRDSYNEIYEHFEKEHSNPVEQTDPIAIVCKVNEDCDLSVDNNPDYVIQINDGTITSIDPSEKQERLKYSEPKLIPEPGFKCLDCNKIYRTKQILVKHALAKHPNELNEINCKQVTVQRRVDSTKGKNKFECLTCSTLHISKFSLLRHTELLHPNISKNKFLYRFLEHQKRGPIPCLRCSFSPKTFSQYCNHIRTHICFNCKECDKKFVKVHLLKEHEKEHNPTDNNTWTCIVCDEEFTNKSLLLRHEYTHKTLKDVQCSKCNKKFTSEYHLKKHEKKVHETCLCDICGKTYELPYIKHHLQTHNTDCPFKCKHCSKTFKTAGILFRHQRKHYTTTEKTICQICGKVIGRSSLTLHMKTHSTEKDEVCDICGASFHRRDHLRQHRSRHETGERTYDCVHCLTILSSKKSYLQHLSNVHGINQNDFPASEKKKFQCTICDKRFPSKTYLADHYRWHRGEKIYSCETCGKTFGTKISVYQHKLTHLPYEQFKYECNICHKRFKRNEQYRNHRRVHTGEKPFPCPICQRPFRVRGEMVKHMRVHTPIENRDIRYKVKTKPKETPTPIITQRTLETVPPAVIRTKTKPKGTPTSIITQRTLKPVGPAVIRTYVRPKIQTVVRPAVNIKPKDTDIEPVNINTDNIFESNNVLRTKNVKIAKVKTSLNQTIFYIDDSSSGSASAEEVGKHMPNLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01105028; iTF_00769113;
- 90% Identity
- -
- 80% Identity
- -