Basic Information

Insect: Harpalus rubripes
Gene Symbol: -
Assembly: GCA_963082715.1
Location: OY720451.1:35439840-35440979[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0021 0.52 13.1 0.5 1 21 150 170 150 171 0.92

2 7 0.00055 0.14 14.9 3.6 2 23 181 202 180 202 0.97

3 7 2.1e-05 0.0054 19.4 0.7 1 23 208 231 208 231 0.93

4 7 6.8e-08 1.7e-05 27.2 0.2 3 23 273 293 272 293 0.99

5 7 1.4e-06 0.00034 23.1 1.1 1 23 299 321 299 321 0.96

6 7 2.5e-05 0.0062 19.2 4.4 1 23 327 349 327 349 0.97

7 7 6.5e-07 0.00016 24.1 1.3 1 23 355 377 355 377 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0021	0.52	13.1	0.5	1	21	150	170	150	171	0.92
2	7	0.00055	0.14	14.9	3.6	2	23	181	202	180	202	0.97
3	7	2.1e-05	0.0054	19.4	0.7	1	23	208	231	208	231	0.93
4	7	6.8e-08	1.7e-05	27.2	0.2	3	23	273	293	272	293	0.99
5	7	1.4e-06	0.00034	23.1	1.1	1	23	299	321	299	321	0.96
6	7	2.5e-05	0.0062	19.2	4.4	1	23	327	349	327	349	0.97
7	7	6.5e-07	0.00016	24.1	1.3	1	23	355	377	355	377	0.98

Sequence Information

Coding Sequence: ATGTTTGATAAAACTAATATGCAATCTAACAGCAACACTGGATCAGTATACAAagaatttttaagtaaaattagtaatcttaaattcattacaataaaacaaacggACGATTCGCCCAAAAAGAATGTAAAAGACATTTCACATATTGTAGATAATTTAACGAAATATGGATTAATAGTTAAAAAAGTTCCTGAAATAACAGAGAAAAGTTCTGAAAATAGTAATGAGAAGAATATTGCAAAATTCCATAATAATCAAGAAATATCTGATGATGAATCagaatatgaaatagaaactcTTGATGATGACGAATGTGATTTAGAATTTATTCCAGAGTTAAAGAAATTTCGCGAAGAAAAACGTACTAAAGAAATGAAAAATCCATCAGGAGTACAACCTGGTTCATCTAAAAAATCTAGAGAATTTATGGAAATAATCAGTACGAATTACATGTGCATTATGTGTCACAAAAAATTCCCATCAATGGATCTTTTAACTGAACATATGCGAAATCCTACTCCTTGTCGAGTATTAGTAATTAAATGTCCAATATGTGGAAAAGAATTTCCAAATAAATCAAGATGTTCatcacacatgcatacacacaaaGAAAAGCAGAAATTTCCCTGTAACAAGTGCAAAAAGCAGTTCTCAACTCAGATCGCTCTACAAATTCATATAGAGTTTAATCATACTGAGCATTTCGATTCAACAGACGAAGGGTGGAAATGTAAGATGTGTGAATACCTGTGCGATTCTCGCATCAGAATCGTCCATCATGTAAACGGGAAACATCTGCATATTAGCGCTATGCTGTGTGATATCTGTGGTAAAAGTTTCGTTCGAGAAAGTAGTTTACGTGCGCACATTATGACTCATAGGGAAACTAGATCATATTTATGCCAAATTTGTTCTAAAGGTTTTAAGATGAAAAGTTCACTTCGAGCTCATATAAAAACACATAATCTTGAAAAACGATTCGTTTGTGATGAATGTGGCAAATCGTTTAAGaaaaactgtactttaactGAACATAAAAAATATCACGCCGGTGATTTTTCATATTCTTGTTTATGGTGTGACAAACGATTTGTTTCAAAATCTTTATTGAACACACATATGAAAAATCATTCTGCTTAG
Protein Sequence: MFDKTNMQSNSNTGSVYKEFLSKISNLKFITIKQTDDSPKKNVKDISHIVDNLTKYGLIVKKVPEITEKSSENSNEKNIAKFHNNQEISDDESEYEIETLDDDECDLEFIPELKKFREEKRTKEMKNPSGVQPGSSKKSREFMEIISTNYMCIMCHKKFPSMDLLTEHMRNPTPCRVLVIKCPICGKEFPNKSRCSSHMHTHKEKQKFPCNKCKKQFSTQIALQIHIEFNHTEHFDSTDEGWKCKMCEYLCDSRIRIVHHVNGKHLHISAMLCDICGKSFVRESSLRAHIMTHRETRSYLCQICSKGFKMKSSLRAHIKTHNLEKRFVCDECGKSFKKNCTLTEHKKYHAGDFSYSCLWCDKRFVSKSLLNTHMKNHSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00769099;
90% Identity: iTF_00769099;
80% Identity: -