Basic Information

Insect: Harpalus rubripes
Gene Symbol: -
Assembly: GCA_963082715.1
Location: OY720463.1:904623-916084[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0002 0.05 16.3 1.5 2 23 124 146 123 146 0.96

2 17 5.5 1.4e+03 2.3 1.2 3 23 151 174 149 174 0.79

3 17 1.7 4.2e+02 4.0 0.5 1 23 364 387 364 387 0.94

4 17 3.1 7.9e+02 3.1 0.7 2 23 468 490 467 490 0.93

5 17 0.0002 0.052 16.3 1.1 2 23 500 521 499 521 0.98

6 17 0.23 57 6.7 1.7 1 23 531 554 531 554 0.95

7 17 0.015 3.8 10.4 1.1 3 23 596 617 595 617 0.94

8 17 0.00089 0.23 14.3 1.9 1 23 624 647 624 647 0.97

9 17 8.5e-05 0.022 17.5 0.5 1 23 653 675 653 675 0.98

10 17 1.8e-05 0.0045 19.6 0.5 2 23 682 703 681 703 0.97

11 17 2.3e-08 5.7e-06 28.7 4.3 1 23 708 730 708 730 0.98

12 17 0.019 4.8 10.1 5.5 1 23 736 758 736 758 0.98

13 17 0.00013 0.033 16.9 6.4 2 23 765 786 764 786 0.96

14 17 2.8e-05 0.007 19.0 0.8 3 23 794 814 792 814 0.96

15 17 0.00032 0.081 15.7 0.8 6 23 824 842 822 842 0.97

16 17 5.5e-05 0.014 18.1 0.3 1 23 849 871 849 871 0.98

17 17 0.0044 1.1 12.1 0.9 2 23 878 900 877 900 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0002	0.05	16.3	1.5	2	23	124	146	123	146	0.96
2	17	5.5	1.4e+03	2.3	1.2	3	23	151	174	149	174	0.79
3	17	1.7	4.2e+02	4.0	0.5	1	23	364	387	364	387	0.94
4	17	3.1	7.9e+02	3.1	0.7	2	23	468	490	467	490	0.93
5	17	0.0002	0.052	16.3	1.1	2	23	500	521	499	521	0.98
6	17	0.23	57	6.7	1.7	1	23	531	554	531	554	0.95
7	17	0.015	3.8	10.4	1.1	3	23	596	617	595	617	0.94
8	17	0.00089	0.23	14.3	1.9	1	23	624	647	624	647	0.97
9	17	8.5e-05	0.022	17.5	0.5	1	23	653	675	653	675	0.98
10	17	1.8e-05	0.0045	19.6	0.5	2	23	682	703	681	703	0.97
11	17	2.3e-08	5.7e-06	28.7	4.3	1	23	708	730	708	730	0.98
12	17	0.019	4.8	10.1	5.5	1	23	736	758	736	758	0.98
13	17	0.00013	0.033	16.9	6.4	2	23	765	786	764	786	0.96
14	17	2.8e-05	0.007	19.0	0.8	3	23	794	814	792	814	0.96
15	17	0.00032	0.081	15.7	0.8	6	23	824	842	822	842	0.97
16	17	5.5e-05	0.014	18.1	0.3	1	23	849	871	849	871	0.98
17	17	0.0044	1.1	12.1	0.9	2	23	878	900	877	900	0.94

Sequence Information

Coding Sequence: ATGGCAAAAAGTCATTTGATAAGAAAACATTCGGTAGATCAAACATATTTGGCAAACCCCGACAAAAATATCATCGCTAAAGTCGATGGCAGCCATACTGAATTTTTTTGCGcactttgtaataaaaatagaGAAATGGACATTTTTTTCGGGCACTTAAATTCTCACCATAAATTAAACATAGctagtttattaaatttaatcgTAAAATACGGCGTTAATGTGTTTGTAAATGGCGCCAAAAAAGATGAAGTCGAAGGAGACAAAGACGAAGAGAAAATATACAAGAACAGCTGTCAAATATGTTTGTTGagattcacaaaaaaaatccCTAAAGATTTTCATTTAGTGTATTGTCAATCGCGTATACAGTGTAAATATTGTGAAAAAAGCTTTTcaaacactaatttaattaaaacacacTTAAAAAAAGCACATACCAAGTTTCATTGCAGACAGGGTTGCACAAATTTAGCGTATAACACCGAAGAAAActtattaaaacattatttaaaagttCACGAAGCCGTCGGATGTcgttattgtaataattatatcaCTTTAACAAACTTAGACGAACATTTTGAAACACAACACAAATATAAAGCCATAATCATGAAAAACTTCACTGACACATTATTTGAGGTTACGGAAAAGCAAAACAAACACATTGTCATTTGTTGTTTATGCGATGAAAACATAACCTTACTTGCCGAAAAAATTAAAGACATTTATCAACACTACACATTAATTCACTCAATAACTTATaataaactattacaattaATCGGTTCCAAACCTTTACTTGAAGACTACGACGATTTTTACCGCGAAATTAACGAACAAATCAAAACTGAAGACACGCAAAAAGTTTTAAATCCGTTCGTCCCGGAGGTTAACATCAAAGTCGAGCAAAACTCCGACGATGACGACCGAATATCCGCGGAAGATGACGAACAACAACCGAAATTAGTGAAAAAATTCGTTGATTATTCCTACTTACAAGACGATATTCAAAGCGATATTGATTTCGACGAAACTGAAATAATAATCAACAGCGATTCAGAATTAGACGACGAAAATTCCGAATTCATCTGCGAGTTTTGCGACCAAAAAGAATCAAAATTAATAACACTAACACAACACATAGAATCAAAACACAAATTTAAGGTTAAACTGAAAAAAAtcaattgtaaatattgtaaaaatgaatCTATTAGCTACAAAACACACTCAAATCACTTAATTGAACACCACGGCGCACAAAACTTCGACTTTTCTAAAGAAATCTTCAATTGCACATGCGATAATTATAAAGTAGTTCACTCGCTTGCGCGATGGCACGTCTTAACTGTTCACAAAAATGATCTCCAGCGATATAACGTTGAAGATATTGGCCTCAAATGCAGATTTTGCGAGAAATATTTCTGGGAAAGATACGAATTAAATGGTCATGAAATGAAAGAACATTTTAAGAATCATATACAGGATTTTCAGAAGTGTAGTCAGTGTGATGAAATATTTAGTAGCCAGAAACTTTTAGCAACGCATTCCAAAACTCACGACTTCCCAGAATATTCTAACCTCATTTACAAATGTCTTGTGTGCTATTTCGTTTATCCGACGTTAAATTTACTCCGCGAACACTTTCACTCCGAACACCCAacatcaaaaattttcaaatgtccgATTGACGAATGTGAAAAACTTTGtaagaagaaaaaatacatgATTTGTCATCTTCAACGACCGCATGAAAGAGATTCGAAAGAAATGGAGGCCTTTTGTGACGTTTgcgggaaaaaattcaaaagttttAAGGCCGCTACGATTCACAAATTGATGAAACATCAAAGGGACAGAGCTGGGTTTCAGTGCAGAATATGTAACGAACGTTTTACCACAAGTGAACAAAGAAAATTACATTATACGACAGCACATCCGGGACAACTCGCTTATAATTGTCTTGAATGCGGCAAAGGATTCATAAGTAAATCTGGATTATACGGCCACAAAAAAACCCACCAAGAAAACAACAACATGACGTGTCCATATTGCAGTAAagaattttcaAGACGAGATTCATATAATGAACATTTATTAATCCATATTGGCCCAAGACATCAATGTCCACACTGTCCAAAATCTTTTACCCAGAGGTCAAATTTGACAAGACATGTTAGGATACACACTGGGGCGAAGCCCTATCAGTGTTGTTATTGCGAGAAAAGATTCAGTGATCGTGGGGCCTGCAGATCTCATGAACGAGTTCACACAAAAGAAGAACATTGTGAATGTTCATATTGCggaaaaaaattcacaaaaaaacaaaaattaaagtaCCACTTACGTTACCATACGGGCGAAGgtcTGCTAGACTGCGAAACTTGTGGAAAACAATTCTCAAACACTTATTCATTAAATGAACATAAAAGGATCCACAATTCTGATACTTTATTAATGTGTAGTTGTGGACGAGGTTTTTccacagaaaaatatttaaacaggCACATGCAGACTGTCCACAAACAGTCAGCTACGAAATATATTTGTCCAATATGTTTCAAGCCATTGTATCAAAAATCTTCGTACAATGCTCATATAATGACCCATTCTGCTGTAAAACATGTTCGGTGTCTGCTTTGCAACAAGGAATACAACACCCGCAAAACTGTCAAACGACACATACAAGAAGAACACAATTTACGCGGGAACCCCGAAATCGTTAAACATATTTACCAGCTCACACCACAAGAAGCAGGTTTGAACTTGCCCCCCGCTTCAGAAATGGCCATAAAAATGGGGGGCGACCCACAATTAATGAACATGGACGTTAGACAACTGCAAGAATTAGTTTCTTCTACCAGTTCTGCGgatttagacaaaaaaaataaagcGGTTGACAGGTTTGAACAGGTTCACATAAAAGAGGAACTTGTTTCCGATACGGAAAATGATTCGGATGATGAAATTCCGCTCAGTGAGCGGAAatggaaaaagaaaaagaaataa
Protein Sequence: MAKSHLIRKHSVDQTYLANPDKNIIAKVDGSHTEFFCALCNKNREMDIFFGHLNSHHKLNIASLLNLIVKYGVNVFVNGAKKDEVEGDKDEEKIYKNSCQICLLRFTKKIPKDFHLVYCQSRIQCKYCEKSFSNTNLIKTHLKKAHTKFHCRQGCTNLAYNTEENLLKHYLKVHEAVGCRYCNNYITLTNLDEHFETQHKYKAIIMKNFTDTLFEVTEKQNKHIVICCLCDENITLLAEKIKDIYQHYTLIHSITYNKLLQLIGSKPLLEDYDDFYREINEQIKTEDTQKVLNPFVPEVNIKVEQNSDDDDRISAEDDEQQPKLVKKFVDYSYLQDDIQSDIDFDETEIIINSDSELDDENSEFICEFCDQKESKLITLTQHIESKHKFKVKLKKINCKYCKNESISYKTHSNHLIEHHGAQNFDFSKEIFNCTCDNYKVVHSLARWHVLTVHKNDLQRYNVEDIGLKCRFCEKYFWERYELNGHEMKEHFKNHIQDFQKCSQCDEIFSSQKLLATHSKTHDFPEYSNLIYKCLVCYFVYPTLNLLREHFHSEHPTSKIFKCPIDECEKLCKKKKYMICHLQRPHERDSKEMEAFCDVCGKKFKSFKAATIHKLMKHQRDRAGFQCRICNERFTTSEQRKLHYTTAHPGQLAYNCLECGKGFISKSGLYGHKKTHQENNNMTCPYCSKEFSRRDSYNEHLLIHIGPRHQCPHCPKSFTQRSNLTRHVRIHTGAKPYQCCYCEKRFSDRGACRSHERVHTKEEHCECSYCGKKFTKKQKLKYHLRYHTGEGLLDCETCGKQFSNTYSLNEHKRIHNSDTLLMCSCGRGFSTEKYLNRHMQTVHKQSATKYICPICFKPLYQKSSYNAHIMTHSAVKHVRCLLCNKEYNTRKTVKRHIQEEHNLRGNPEIVKHIYQLTPQEAGLNLPPASEMAIKMGGDPQLMNMDVRQLQELVSSTSSADLDKKNKAVDRFEQVHIKEELVSDTENDSDDEIPLSERKWKKKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -