Basic Information

Insect: Harpalus rubripes
Gene Symbol: -
Assembly: GCA_963082715.1
Location: OY720452.1:67046185-67049715[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.003 0.75 12.6 2.7 3 23 96 116 94 116 0.95

2 8 2.1e-06 0.00053 22.5 1.7 1 23 122 144 122 144 0.99

3 8 2.9e-07 7.4e-05 25.2 1.1 1 23 150 172 150 172 0.97

4 8 1.3e-05 0.0033 20.0 6.6 1 23 178 200 178 200 0.96

5 8 4.2e-06 0.0011 21.6 4.6 1 23 206 228 206 228 0.99

6 8 1.5e-05 0.0037 19.9 0.8 1 23 246 268 246 268 0.98

7 8 0.00011 0.028 17.1 4.7 1 23 286 308 286 308 0.97

8 8 9.1e-07 0.00023 23.7 1.0 1 23 313 336 313 336 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.003	0.75	12.6	2.7	3	23	96	116	94	116	0.95
2	8	2.1e-06	0.00053	22.5	1.7	1	23	122	144	122	144	0.99
3	8	2.9e-07	7.4e-05	25.2	1.1	1	23	150	172	150	172	0.97
4	8	1.3e-05	0.0033	20.0	6.6	1	23	178	200	178	200	0.96
5	8	4.2e-06	0.0011	21.6	4.6	1	23	206	228	206	228	0.99
6	8	1.5e-05	0.0037	19.9	0.8	1	23	246	268	246	268	0.98
7	8	0.00011	0.028	17.1	4.7	1	23	286	308	286	308	0.97
8	8	9.1e-07	0.00023	23.7	1.0	1	23	313	336	313	336	0.98

Sequence Information

Coding Sequence: ATGATAACCTATATAGATAAATTAAACACATGCATCCCAGAAATCAACACTTTGGATCTAAATAACAGAAATCTAATAAGAAACTTACAAGAAACAACGAATAATGACTGTAATGGAAAAGATGTAGTCCAATTTACACATTTAACATCTCTACCTGAAATAGTACAACAACCTTTCGCTTTACAAGAAGAATTGGAACGAGATTTAGCTTTAGAACTCGACAATGAACCTCACGTTGTCGCCGACTCCGAACTTTCAGAAGAACAACAAAAACTGCGACATCTTTGTTCATTTTGCAGTAAACCCTTCAAATATCGCCAAGATATGCGCATTCACGAAAGAATTCACACGGGGTACAAACCATATACTTGTGAAATATGTTCAAAAACATTTGCGAAATCTACGCgattaaaattacatatgaaCACGCATACTCGCgaaaaatcattcatttgtaaaatttgcaataagAAATTTAATCAAAGTTCTAATTTAGGCGTTCATATGAAATTACACACGCAAACAGAAAGATTTTCTTGTCATTTATGCGAGAAATCGTTTTCACAAAAACGTCATCTCAGGCAGcatattttatttcatgaaaATGAACGACGCTTCACTTGTGAAAtttgtaattggaattttgggATGAAACATCATTTAAAACGTCACATGATGACTCATTCGGGGCAGAGGCCCCCGAGAAAAGAGCTCCCGAGGGAGCGAGAGCGGTCCTTTTCTTGCAACCAATGTGATTGGAGTTTTATGAGTAAAGAAGTTCTCAAAAAACATTTACTTATGCACACTAGAGAAAATCCTAAACTCAGAGCTAGTCTCACAGATGAAAGACGGAGATTTTCGTGTCCAAAATGTATTTGGAGTTTTACGAAAAAACACCATTTAGAAAGGCATATGGTGAAACATGAAAATAGGATATTTCCCTGCACTATCTGCAAGGAAGAGTTTaggaaaaattatgaattacaAAGGCATTTGAAAACCATACATTGCGAACAGAAATTACAAGGTACTCAAGCatcttaa
Protein Sequence: MITYIDKLNTCIPEINTLDLNNRNLIRNLQETTNNDCNGKDVVQFTHLTSLPEIVQQPFALQEELERDLALELDNEPHVVADSELSEEQQKLRHLCSFCSKPFKYRQDMRIHERIHTGYKPYTCEICSKTFAKSTRLKLHMNTHTREKSFICKICNKKFNQSSNLGVHMKLHTQTERFSCHLCEKSFSQKRHLRQHILFHENERRFTCEICNWNFGMKHHLKRHMMTHSGQRPPRKELPRERERSFSCNQCDWSFMSKEVLKKHLLMHTRENPKLRASLTDERRRFSCPKCIWSFTKKHHLERHMVKHENRIFPCTICKEEFRKNYELQRHLKTIHCEQKLQGTQAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00769072;
90% Identity: iTF_00769072;
80% Identity: -