Basic Information

Insect: Harpalus rubripes
Gene Symbol: -
Assembly: GCA_963082715.1
Location: OY720465.1:29695761-29722167[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 9e-05 0.023 17.4 1.4 1 23 239 261 239 261 0.95

2 12 0.0012 0.3 13.9 0.3 1 21 268 288 268 289 0.95

3 12 1.5e-07 3.9e-05 26.1 1.3 1 23 296 318 296 318 0.98

4 12 0.00045 0.11 15.2 6.2 1 23 324 346 324 346 0.98

5 12 0.0018 0.46 13.3 0.2 1 21 351 371 351 371 0.94

6 12 9.8e-05 0.025 17.3 0.2 1 23 455 477 455 477 0.96

7 12 0.18 46 7.0 1.4 1 23 483 505 483 505 0.98

8 12 1.2e-06 0.00029 23.4 0.3 1 23 517 539 517 539 0.95

9 12 0.0043 1.1 12.1 6.5 2 23 546 567 545 567 0.96

10 12 0.00018 0.044 16.5 0.3 2 23 573 594 572 594 0.97

11 12 5.8e-06 0.0015 21.1 0.5 1 23 600 622 600 622 0.95

12 12 0.33 84 6.2 5.3 2 17 629 644 628 651 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	9e-05	0.023	17.4	1.4	1	23	239	261	239	261	0.95
2	12	0.0012	0.3	13.9	0.3	1	21	268	288	268	289	0.95
3	12	1.5e-07	3.9e-05	26.1	1.3	1	23	296	318	296	318	0.98
4	12	0.00045	0.11	15.2	6.2	1	23	324	346	324	346	0.98
5	12	0.0018	0.46	13.3	0.2	1	21	351	371	351	371	0.94
6	12	9.8e-05	0.025	17.3	0.2	1	23	455	477	455	477	0.96
7	12	0.18	46	7.0	1.4	1	23	483	505	483	505	0.98
8	12	1.2e-06	0.00029	23.4	0.3	1	23	517	539	517	539	0.95
9	12	0.0043	1.1	12.1	6.5	2	23	546	567	545	567	0.96
10	12	0.00018	0.044	16.5	0.3	2	23	573	594	572	594	0.97
11	12	5.8e-06	0.0015	21.1	0.5	1	23	600	622	600	622	0.95
12	12	0.33	84	6.2	5.3	2	17	629	644	628	651	0.85

Sequence Information

Coding Sequence: ATGATAGACTTTGCTAAAATCTGCAGGTTATGCGTTAGTGATAATAATACTCTAATAAATGTTTTAACTTTAGATGATGATTCTGTAACATTATGTGATAAATTAAAGACAGTCTGCGATATACAAGTAAATGCTAACGATACTCTCCCAACAACAATATGTGTTCTATGCCAAGAAAAATTACGCCAGTTTTACGAGTTCAAATTGATGTGTTTACATTCTAACGTTCTTCTAAATCGATACAAAAAAGACTTACCGGCAGCCTCACAGTTTGTAGGAGACTTTAGGGATAAATACGGCAGTGCGTTTGCCAGTGTTGACATTAAACAAGAAGTAGACAAACCGAACGATGCAGAATTGACAGAGAATTCGTCCAAAgataataacttcactgcaacAGTAGACGAGGGGACACAAAATGTTATTCCTCTAAGGAAGAGTCGAGAAAAAGATGTAAATGAAACGTTTGTAGAAGATGAGCAGAGTCACGCTTATGATGATTTCACTGAAACGAGTTTGGAGTTGAATGTGGATGAAGTTGAAGAAGTACTTATTAATTGGGGAAAAAATAAAGCTGATACAAGtgaTGAGGAAAGTTCGAGTCAAGATGCTGAATCAGATGACAAGGACGAGGACTACAAGCCAGATGAAGATTCATGCGACATCGGTGAAACCAAAGTGGGTcttacagacgctgtggagccCAGCGGCACCTATTCATGTCATGAGTGTGACAAGACGTACACGTCTACGAGGGGCCTGGAGAATCATGTTACAGCTCATGTGGAAGCGAGAACTGACTTCAGtTGCTCTCGTTGTTCAAATACATTCACCAGCGCTTCTGGGCTCCGCTTGCATATCATGCGATACTCGGGTTCACGACCGTATTCATGCAAGATATGCGGCAAACGATTCACCGACCGACCTAACCTATACAACCATCGACGAGTTCACTCCACCGACCGGCCGTACCAGTGCGAGACATGCGGCAAGCGGTTTAAGTTCGCGTCTTGCAAACGAACCCACATGAAGTACCACGAGGAGAGGACGTTCTTGTGCAGTATTTGCGGAAAGGCTTTCGCTTTAAAGTTacaatataaaagtcatattaGACCCGTCGTTACGTATGGTAGCGAGACATGGACTCTCCATAAAGAAGAAGTGGAACTTAGACGTTTCGAGagaaaaattgaaagaaaaatatttggcCCAGTTCAAGAACCAAATGGCTGTTGGAGAATCGGAATGAGTTTTGAACTAAATGCTTTAATAAATGAAGCTGATATAGTTAGATTTATAAAATCCCAGAGATTAAGGTGGCTAGGCAATAACCACCTTCGTATCCACAGCGGTGAGCGGCCGTTTAAGTGTTCGTTATGTTCAGCGTCGTTCGCAGATCCATCCAGCCTTAAGTCGCACGCCGTGAAGCACACGCAAGGCAAACCGTTCCAATGCGAGTTGTGCCTGCAGGACTTCAAGTGGGAAAAGAGCCTCAAGTCTCATCGAAAATTACACACTAGGACCGAAGAGGAGCGCAGAGAACGGAAGTTCTCGTGTGAGATTTGTGGCAAACAGTTCCGAACTAAAGACTCGTTAATAAAACATGGGGCAGTGCACAGCGACGCGCGACCTTGGAGCTGCGACCTGTGTGGCAAAACGTTCAAATTCCAAAGCTGTTGGCGTACGCATAAAAAACACCACGAAGGCAATCGGGTGGTGTGCACTATCTGTGGAAAGAAATACCTCAACAATTCTGTACTAAACAACCATATGCGATTACACACTGGCGAGAAACCATTCAAGTGTTCGTTGTGCGACAAGGCCTTCGCTGATAATTCCACACTGCGGTCGCACAAAATCGCACACAGCAATATTAAGTCCCAACGCTGCCAGTACTGCGGCCTGGAATTCAAACACAGATCCTACTTGATGTTCCACTGCAAGAAGAAACATCTCGACGAGATGCAACAAGAACAACAAAATACTGAACAAATAGAGAATGTAGAAATGCaatga
Protein Sequence: MIDFAKICRLCVSDNNTLINVLTLDDDSVTLCDKLKTVCDIQVNANDTLPTTICVLCQEKLRQFYEFKLMCLHSNVLLNRYKKDLPAASQFVGDFRDKYGSAFASVDIKQEVDKPNDAELTENSSKDNNFTATVDEGTQNVIPLRKSREKDVNETFVEDEQSHAYDDFTETSLELNVDEVEEVLINWGKNKADTSDEESSSQDAESDDKDEDYKPDEDSCDIGETKVGLTDAVEPSGTYSCHECDKTYTSTRGLENHVTAHVEARTDFSCSRCSNTFTSASGLRLHIMRYSGSRPYSCKICGKRFTDRPNLYNHRRVHSTDRPYQCETCGKRFKFASCKRTHMKYHEERTFLCSICGKAFALKLQYKSHIRPVVTYGSETWTLHKEEVELRRFERKIERKIFGPVQEPNGCWRIGMSFELNALINEADIVRFIKSQRLRWLGNNHLRIHSGERPFKCSLCSASFADPSSLKSHAVKHTQGKPFQCELCLQDFKWEKSLKSHRKLHTRTEEERRERKFSCEICGKQFRTKDSLIKHGAVHSDARPWSCDLCGKTFKFQSCWRTHKKHHEGNRVVCTICGKKYLNNSVLNNHMRLHTGEKPFKCSLCDKAFADNSTLRSHKIAHSNIKSQRCQYCGLEFKHRSYLMFHCKKKHLDEMQQEQQNTEQIENVEMQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -