Hrub084823.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- -
- Assembly
- GCA_963082715.1
- Location
- OY720466.1:25038565-25040538[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.2e-06 0.0023 20.5 0.9 1 23 179 201 179 201 0.96 2 13 0.0017 0.44 13.4 0.4 2 23 207 228 206 228 0.95 3 13 0.00015 0.038 16.7 3.8 1 23 235 258 235 258 0.95 4 13 4.3e-05 0.011 18.4 0.4 1 22 344 365 344 365 0.96 5 13 0.00035 0.089 15.5 0.9 2 23 377 399 376 399 0.94 6 13 0.0053 1.3 11.8 5.2 1 22 402 423 402 423 0.95 7 13 6.1e-05 0.015 17.9 3.9 2 23 430 451 429 451 0.97 8 13 0.0062 1.6 11.6 0.6 2 23 476 497 475 497 0.96 9 13 1.7e-05 0.0044 19.6 1.7 1 23 503 526 503 526 0.95 10 13 0.00088 0.22 14.3 3.3 1 23 531 553 531 553 0.98 11 13 1.7e-05 0.0042 19.7 4.9 2 23 561 582 560 582 0.96 12 13 2.8e-05 0.0071 19.0 0.2 2 23 590 611 589 611 0.96 13 13 0.011 2.8 10.8 0.6 1 23 617 640 617 640 0.91
Sequence Information
- Coding Sequence
- atgtTTATGGAGAAGCAAGAATTGCTTCAAACTTATCTTCAAAGTTTGAATCATCAAAAAAGTGtcaaaaaactgcaaaatatgTCAGCAAACACTGTTAATGTTCATCAATATATTCCTAGCTGTCAAAATGGAGTCTTGAATGTTGATTTGACACAAGACGATCAAATATTCGATTTGACAGCTGATGATGACGAAAATGAaacattatttgaaaataatgtcAGTACTGTTGATTTTACGCTGTCAAATCCTTTTGTGCAAAAGGTGCCGAAAATGGAGGAAATTGTTGATGAAAACACCGAAACAAATGAATTGTTGGAGGTTATAGTCAAAACAAAAGAAGAAGAAACAAATGatgaaacaaatgaagaaacgaatgaagttgaaaatgagcgggaatttataaataatttaccgcgaattgaagaaaattatgaaattgtTGACGATCAAAAACTGGCGGTAaatgaaaacggtttgaaaataGTTATCCGTAAAAATAATTCGGAAAGTTCGgacgaaaaagaaaaatttgaatgtGTATATTgcggaaaaatattttataacctccAAAATTTAAAAAGGCATAAATTAGGCCATCCGACACATAATATTCCGTGTAgaatttgcaaaaaagttttgaaaaacCGCCAAAGCTTTCAATTGCATATGGCGCTCCATAGTAccgattataaaaaatataaatgtaatttatgtaataaaGGATATACGtcaaaacataatttgattctTCATCGTacaaataaacatttgaaaaattttgaaacgCGATATTCATCGCGGAGACAAAGTGTCGATTcgaaagaaaatataattaaagaaaatttgaatttagagcgGGAAATAACATCAGCGACTGTCGACCCGAAAAATTTGgaagaatttcaaaaaactttaaaatattgtaatacggTTGTTGCCAAACGGGGTCGTCCCAAAAAAATTCACACCGATTTTTCGAGAAATGACGTATATGTCAAAcatttcaaacgttttcatacTAATTTCACTTGTGACACATGTCAAAAAGTCTTTGACACCAAAAAGGCACTATCCCTTCATATACGCAGTCAAACTTGCAGAAATCACAACGACATGAAAATTCATTGCGAACAATGTGACCAATATTTTTCGAGTTCTGtcaattataataaacatattGACAGCGCCCATACCGAGCACAAATGTCAAAAGTGTCAAATTCAATTCTCAAATAAAATCAAGTTGCGACATCACCAGAAAAAAAATTGCCAGTCGAATTTAAAATGTGAATTTTGTAATCGCACTTTTAAACTTGCTATGCATTTAAACAGACATTTAAAAACACATATTGATGCTGACATGttttcaaatgacgtcacaaatgATATTCAGCAAGAAACTGAAGAAACAACTGAATTAAAATGCGAGAAGTGCGACAAAACATtcttaaacaaaattaaattagatttacatttattgatCCATTCTGGTATTTACAATTTTCCGTGTAAATATTGCCCGCATATATTCACAACTAAAGACCAGTTACAGTCCCATGTAACAAGAATACATCGCAACAAAATTTACACATGTAAACTTTGTTTAAAATCGTTTAAAACCGTTTTATATTACAAGCGACATATGTTGCAACATTCGAATTTCGCGCCAAAACTCCCCTGTGAATTTTGCGACAAGACATTCACTAAACAGCGCCATCTTAGAAACCACAAAAAGACCCATACGGCGTCCGAAAAGATTATTCAATGTACTGAATGTCCTAAAGTCTTTTTGACAAAGTCTAATTTGTTGAGGCATTTGGTTGTTCATACAAATGAGCGGAAACATGTCTGTAAATATTGTGGGCGGAAGTTTAATTTGGGCGCCATTTTGGTTagacatattaaaattatgcatGAGGATGATGAGTTGTTTGAAGACGGCGTAAAAATTACTGTTGATcccaaataa
- Protein Sequence
- MFMEKQELLQTYLQSLNHQKSVKKLQNMSANTVNVHQYIPSCQNGVLNVDLTQDDQIFDLTADDDENETLFENNVSTVDFTLSNPFVQKVPKMEEIVDENTETNELLEVIVKTKEEETNDETNEETNEVENEREFINNLPRIEENYEIVDDQKLAVNENGLKIVIRKNNSESSDEKEKFECVYCGKIFYNLQNLKRHKLGHPTHNIPCRICKKVLKNRQSFQLHMALHSTDYKKYKCNLCNKGYTSKHNLILHRTNKHLKNFETRYSSRRQSVDSKENIIKENLNLEREITSATVDPKNLEEFQKTLKYCNTVVAKRGRPKKIHTDFSRNDVYVKHFKRFHTNFTCDTCQKVFDTKKALSLHIRSQTCRNHNDMKIHCEQCDQYFSSSVNYNKHIDSAHTEHKCQKCQIQFSNKIKLRHHQKKNCQSNLKCEFCNRTFKLAMHLNRHLKTHIDADMFSNDVTNDIQQETEETTELKCEKCDKTFLNKIKLDLHLLIHSGIYNFPCKYCPHIFTTKDQLQSHVTRIHRNKIYTCKLCLKSFKTVLYYKRHMLQHSNFAPKLPCEFCDKTFTKQRHLRNHKKTHTASEKIIQCTECPKVFLTKSNLLRHLVVHTNERKHVCKYCGRKFNLGAILVRHIKIMHEDDELFEDGVKITVDPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -