Hrub043198.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- -
- Assembly
- GCA_963082715.1
- Location
- OY720456.1:3081947-3092689[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.057 14 8.6 2.0 1 23 276 298 276 298 0.93 2 13 0.041 10 9.0 0.3 1 21 303 323 303 327 0.92 3 13 0.024 6 9.8 1.4 1 23 362 385 362 385 0.89 4 13 8.2e-06 0.0021 20.7 0.8 1 23 391 413 391 413 0.98 5 13 0.0021 0.54 13.1 0.3 1 23 421 444 421 444 0.89 6 13 3.3e-07 8.3e-05 25.1 3.6 1 23 450 472 450 472 0.98 7 13 1.1e-05 0.0028 20.3 0.6 1 23 478 500 478 500 0.98 8 13 0.00028 0.072 15.8 3.7 1 23 506 528 506 528 0.97 9 13 3.7e-07 9.4e-05 24.9 0.9 1 23 534 556 534 556 0.98 10 13 5.4e-06 0.0014 21.2 3.4 1 23 562 584 562 584 0.99 11 13 0.34 85 6.1 6.0 2 23 591 612 590 612 0.97 12 13 0.00011 0.027 17.1 2.6 1 23 618 640 618 640 0.99 13 13 4e-07 0.0001 24.8 1.5 1 23 646 668 646 668 0.98
Sequence Information
- Coding Sequence
- ATGGAGGAGCAAATTTTGCTGTACGATTCAACATTTTGCAGACTTTGTGGGGAAGAAAATGAAAatggtatattattatttggatCAGACGAAAATGAACAAGATTTATGTGCATCTATAAACCGATATCTGCCGCTAAAGgTGCAAAATGATGGAAAACTTCCCCGTACAATATGCCCCGGTTGCAATATACAACTCGCAGCCTTGGTACAATTTATGGAACTTATTATCACCGGCCAGGAAAAAATTCGGGAAATGTGGAAAAACCAACAAGAATTCCTacgaaaacaagaaaaaaataagcaagttttagaaCAAACTTTATTTGATGCTGTTGATAATAAcatagaaatttttattcaaaTTATGCCAGATGGAACTTTATATGCTCCCGATCATGAAATGACTTTAAAAATGGAAGGATTAGAAAAACCAAGGCGAAAACGAGGCAGGCCTCCAAAACCCCCTCCAGGTAGTATAGTTGTTGAAGAAGAGAAAAAAGAAGAAGAGCCAGAACCCGAAGAAGATTTGGAAGATGATCCAGATGGACGAAAACGACGAAGAAGAAAAGTGCCTTCTAGATTTAGAGAAGCAGTACAGggcAAAGAATTGGAGCGTATATTTCGAGAAGAAGGAGTAATAGATGAAGAGGAAGATTCCGAAGATGAAGACATGGACGAAAGAAACATTCCCATTTCGGAAGAAACGGGAGATGAAATAATCggacatttagaaaataaagatGGACAAGATTTAGGCGAACTTGTGATAATaaacaaagctaaaaacaatcGCATGAAAGCGAAAAGTCGtcgaagaaaaaaattcacttgcGAAATTTGCGGGCGCGGTTTTATGCATTACGGGAGATATTTAGTTCATAAAACTTATCATAAAGGTGTCAGATATGAATGTACGACTTGCACAGAACTTTATAATTCAAAAGAGGAGTTACTTGAACATCAAACTCTAACGGCTCATGCGGGCGAAGGTATCGTTGAAAGTTTAGATAATATAAAAGCACAATTAACGGAAACACcagtaattgaaaataaaaccGAGCCAATATCTCCAGAACATAAATATCCGTGTGAACAGTGCGACAAATCGTTTATGTCAAAACAAAGCCACGAAGTTCACGTTAAAGCTAAACACGAGGGCCAAAAACCATTTCAGTGTGAAAAATGCGACAAAACTTTCGCCTACCAAGCAAGTTTAAAAGGCCATTTGACGTCCCACGAGCAAAAATCAGAAAAGGGCTACCCATGCGACCTCTGTGACAAAATCTTCAACCACCCCAGCAGTGTGGTGTACCACAAAGAGGCGGAACACAACAACGGAAGAAGATTTGTGTGTAATAAGTGCGGGAAAAGTTTTAAACATAAACAACTCCTACAAAGACATCAGTTAGTGCATACGAACGATCGGCCGTTTAGTTGTAAAGCGTGTGGTGCTTCGTTTAAAACTAGAGCTAATTTATTGAACCATCAGTCGACGCACACGGGAGTGAAAAAGTATTTTTGTCAGCAGTGTGGACAGTTTTTTGCGCATAAAACGTCTCTAACTTTGCATTATCGGTGGCATAGTGGGCAAAAGCCGTATGAGTGTAGCGTGTGCAAAAAGGCGTTTTCACAAAAGGGAAATTTGAGGGAACACAAGAGAATACACACTGgGGAAAAGCCCTACACGTGCGAGTTTTGCGGTCGAAAATTCACCACCTCTTCCCAATTTAAACTCCACGTAAAGCGTCATACGGGCGAACGACCATGGAGTTGCGAATATTGCAGCAAATCTTTCTTACATAAAGACACTTGGAAATGCCATATGCGCAGACATCGCAATGAACGCCCGTATCAGTGTTCGCACTGCCTCAGAGATTTCACTGAGCAATGGGCGCTTAAAAAACATCAACGCCTTCATACTGGAGAGAAACCGTATATTTGTGAGATTTGTAATAAGGCTTTCGCAGATTGTTCGAATCTCACAAAGCATAAAAGAGTCCATAGAAATATTAAAGAGGAGATTCAGACTGTTACCGGAGaCGGCAATGTGATATATGTAACTTACCAAGATCCGTCTGACTCAAACGACATTCCGGCTTTAGTACACATCTTAAACAATTCTGCTGCTGCATTGGACACTTCAAACTCTTTACAACCTACGAATAATGCTTTAGAAAACACACTAATGGCATCAGCCGATAATGCTACTGAACTCGGACTAGATTCCTTCGATGAAAATTCAGGGTTACCTTTACCACCTGGACAACTACATGTGACGGATGAGGAAGGCAATCCAATTTATTTTACAGCACAAGACGGTCAAAGAATTCGCGTGACGTCATTCGATGGCGAAAACCTCCAAGTGTGTATGGATGATGGGACAATAGTCCCGATTCAACTAAATGCCGAAACCGGAAAACCTGTAGCTGTTGAATTAACCGACGAAcaattgaaaagagattttaaAATTGATGATCAAATTGTTATCCCAGCATTACCAGATCCAAAAACAGCAAACGGGTTAGAAAGTGAAACATCTGGATTAATGAACCAACCAGTCCAATTTATGACTGAAGACGGTCAGAATCTTTGTTTGGTAACAACGTATAATATTGACGCCGAATACTTACCCATACAGATTACATAG
- Protein Sequence
- MEEQILLYDSTFCRLCGEENENGILLFGSDENEQDLCASINRYLPLKVQNDGKLPRTICPGCNIQLAALVQFMELIITGQEKIREMWKNQQEFLRKQEKNKQVLEQTLFDAVDNNIEIFIQIMPDGTLYAPDHEMTLKMEGLEKPRRKRGRPPKPPPGSIVVEEEKKEEEPEPEEDLEDDPDGRKRRRRKVPSRFREAVQGKELERIFREEGVIDEEEDSEDEDMDERNIPISEETGDEIIGHLENKDGQDLGELVIINKAKNNRMKAKSRRRKKFTCEICGRGFMHYGRYLVHKTYHKGVRYECTTCTELYNSKEELLEHQTLTAHAGEGIVESLDNIKAQLTETPVIENKTEPISPEHKYPCEQCDKSFMSKQSHEVHVKAKHEGQKPFQCEKCDKTFAYQASLKGHLTSHEQKSEKGYPCDLCDKIFNHPSSVVYHKEAEHNNGRRFVCNKCGKSFKHKQLLQRHQLVHTNDRPFSCKACGASFKTRANLLNHQSTHTGVKKYFCQQCGQFFAHKTSLTLHYRWHSGQKPYECSVCKKAFSQKGNLREHKRIHTGEKPYTCEFCGRKFTTSSQFKLHVKRHTGERPWSCEYCSKSFLHKDTWKCHMRRHRNERPYQCSHCLRDFTEQWALKKHQRLHTGEKPYICEICNKAFADCSNLTKHKRVHRNIKEEIQTVTGDGNVIYVTYQDPSDSNDIPALVHILNNSAAALDTSNSLQPTNNALENTLMASADNATELGLDSFDENSGLPLPPGQLHVTDEEGNPIYFTAQDGQRIRVTSFDGENLQVCMDDGTIVPIQLNAETGKPVAVELTDEQLKRDFKIDDQIVIPALPDPKTANGLESETSGLMNQPVQFMTEDGQNLCLVTTYNIDAEYLPIQIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470183;
- 90% Identity
- iTF_00769040; iTF_01104963;
- 80% Identity
- -