Hrub084553.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- -
- Assembly
- GCA_963082715.1
- Location
- OY720466.1:17634220-17637387[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.3e-06 0.00084 21.9 1.7 2 23 65 86 64 86 0.97 2 14 1.4e-07 3.5e-05 26.3 2.7 1 23 92 114 92 114 0.98 3 14 0.064 16 8.4 5.7 1 23 157 179 157 179 0.97 4 14 0.00046 0.12 15.2 0.4 1 23 185 207 185 207 0.98 5 14 0.00022 0.056 16.2 4.9 1 23 218 240 218 240 0.96 6 14 3.9e-05 0.0099 18.5 0.2 2 23 247 269 246 269 0.91 7 14 4.1e-06 0.001 21.6 1.0 1 23 280 302 280 302 0.96 8 14 0.00027 0.069 15.9 1.2 1 23 522 544 522 544 0.95 9 14 0.039 10 9.1 0.0 2 23 630 651 629 651 0.97 10 14 0.00084 0.21 14.3 4.5 2 23 898 919 897 919 0.97 11 14 0.2 52 6.8 3.3 2 21 926 945 925 946 0.92 12 14 0.00032 0.082 15.6 3.6 2 21 963 982 963 985 0.95 13 14 0.0013 0.34 13.7 6.0 1 23 991 1013 991 1013 0.96 14 14 6.3e-07 0.00016 24.2 1.7 1 23 1020 1042 1020 1042 0.98
Sequence Information
- Coding Sequence
- ATGGAATACATTTCTGTTAAAGAAGAGTGTGAAGAGACCCCTTATAGACATGAACACAGTGAAAGTGTAGTGCAAAGTGCAACAAAAACAGAATGCGAAGAGAATATAGCATTAAGAACAAATAATCATGGATATGAAGAAATTCTTATTAAACAAAATCCGAGCTCCTTGAATTCTGATGAGCAAAAAAAACAGTGTTCTATTTGCGGGAAAATATTCAAAAAGCAGTATTATCTGAAACGACATGTAGAAAGGCATTCAGAAATCAAAAAATTTGAGTGTTCTATTTGTGGCAAGTCGTGTGCAAGGAAAGACTCTCTGAAAAAACACATAAAAACTCATACAAAGAAGAAAGACAGTGCCAGTAAACAGAATGAAGAAAAAAGTCAGTGTCCTATTTGCTGTAAATTTATACTGAGCAAGAATATGAGAAAACATCGAAGATGTGCACATGACGAAATCAAAACTTATCGTTGcaatgtttgtaataaatcgtatacaaaaaaatttgttcTGAAATGTCACTTAACAACACATATTGGTAAAAAAGAATTTGAGTGTGGTATATGTAACCAGTTATTTCCAAATAGAAAAGCCCTAAATTATCATTTGAAAAGTCATACTGGTAGTAATGGATACACATCACTGATTTACCAATGTAGTCTATGTCACAAATCATTTAATAGTAAAAAAACTTTTGAAGATCACATGGATTTTCATAACGGTATAAAACACAATCAATGCCCGACGTGTCCTAAATCATTTGTAAATAAACGGGCCCTGGTTAGACATTTATATGATGTTCATAAACAGACCGAACAAAAAGGCAGGAAAGATTTTGAGTGTCCGAAATGTCCTAAATCATTTAGCACGAGAAAAAACCTACTTATGCATTCAAACCTGCATTTATTGGATGACCAGACCCCTACTTACAATATGATGCATACAGTTAGTACTGACACATCGAAGGACAGCAGTGCATTTATAGAAtcaattaatacaaataaggaaCACATTTTTGTTAAAGAAGAAGAGTCTGAAGAAATTGATTTTGAACATGAACTTAATAAAACTGTTATATCGAAatcaagtaataataaatttgaagatACTTTTATCAATGAACAACCGATAGAAGACATTACAAACGAGAAACAATGTAATGAAGAAATACAAATCGGTACAGAAAATATCTCTGAAGATATAGTATCTGAAACTCACACATCTGAAGATATTCTTGCTAACAAACAACTGATGAAAGACAAATTCGTGGTCTACAATCAAGATAGCATTGACTCGTCTAAGAACAATAGTTTGACAGTGGAAAACATTGAAGACATTTTTGTTAAAGACGAACAATATGAAGTAACTTCCTATGAACATGAGCtatataaaactatattatcGGAAATAAGTAATAATGAATTTGATAAAACTCTCATTAAAGAAGAACCGAAGAAAGACGACTACAAAAAAAGTACTGATGATGTGACTATTTGTCATATATTTACACAAGCTGGTAATACGTTAAAACCTACAGAAACACAAACTGAAAGCATAGTTTTTTTATGTCATATATGTCCAGAGTCATTTACACTCAAACGAGAACTTTAcgaacatttaaaaatacatacatacattgtGGACGCAGAGTCGTCGAATGACAATAATTTGACAGCAGAAAACATTGAAGACATTTTTGTTAAAGACGAACATGATTtagatataattaataataaatttgaagaaaCTCTCATTGAAGAAGTACCGCAGAAAGACAGCTACATGGACTCTGAAAATTACAACAATCAAAAAGAAGACAAAAGTAATGATATTGGTGGTAATATGTTAGAACATAAAGAAACACAGCGTGACAGCAAAGATATACAATGTCCAATATGTCCTGAGTTATTTATACTGAATCTAGATCTTTACGAACATTTAAAGGTACATACATTGAGACATCAAATCATTAATGATAATCAGGTGCGAGCAGATCACATGGAAAAAAAATCTATCAAAGAACTGTACGAAAAAACTCCTTTTGATCATGAActttataaatgtataaaaattgaCACAGAACATATTTCGGAAGAAACGAATtgtaaatttgaagaaaatctCATTGTAGAACAATCAATGAAAGATAGTAACATGGACTCTGAAgaatattacaaaaatcaaaaagagAAGTCGTCGTTTATTCTAAAAAGGGACATGAACCCACTTGTAAAAACGCATACATCAATTTATCAGAATCTTATTGACAATCAGGTGCATGCAGATAACACCAACAATGCGATTTTAGAaacaaatagtaaaaatatggaAGACATTTGTGTTAAAGAAGAACATAGACTTGATAAAAGTGATATATCGGAAGAAGAGAATGTTGCATTGGTAACaagtaatacaaaatttgaaccaacttatattaaaaaacaaccGATGGACTGTGAAGATTACAATAATCCAAATGAGAATTGTAAAACTAGTAAAATCGGTACAGATAATATTTCGAAAGAAAAAGATGTAGTATCGGATACATGTAATGATAAATTTGAGGAAATTCTGATTAAAGAACAACCGATAAAAGACAATTACATGGATTCTGACAATTACAACAatcaaaatgagaaaaaatgtACTGAAACAGAAAGCTCCGAGAACTCCAAAGAGAAATATAAACAATGTCCTATTTGTAATAAAccttttaaacataaaaattcttTGGAATGTCACATGAAGGCACATGAAGGTATGAAAGATTTAGAGTGCCCGAAATGTCATAAATTGTTTGTCCTGAAAAGATGTCtacttaaacattttaaaatgtgttCGTTCAATCAAGAAAACTCCTTAATCTCTGATATGAAACAAAGACAGTGTCCAATTtgtgatgaaatattttcaactCATAGTAATATGagaaaacatttaaaatgcacacATGATGGAATAAAAAATCATCATTGCAATTTGTGTAGTAAATCTTTCAGAGAAAAGGCTAGCCTGAAGTACCATATGACAAGTCATACTGGTCAAACAGGAAAATTTGAGTGTTCTATTTGTCGTAAGTCGTACACAACGAAAGGCTCTCTGAACAGACATTTAAACACTCATACGAGCACTCATACAAATAGGACTAGCAGTATTCAGAATTag
- Protein Sequence
- MEYISVKEECEETPYRHEHSESVVQSATKTECEENIALRTNNHGYEEILIKQNPSSLNSDEQKKQCSICGKIFKKQYYLKRHVERHSEIKKFECSICGKSCARKDSLKKHIKTHTKKKDSASKQNEEKSQCPICCKFILSKNMRKHRRCAHDEIKTYRCNVCNKSYTKKFVLKCHLTTHIGKKEFECGICNQLFPNRKALNYHLKSHTGSNGYTSLIYQCSLCHKSFNSKKTFEDHMDFHNGIKHNQCPTCPKSFVNKRALVRHLYDVHKQTEQKGRKDFECPKCPKSFSTRKNLLMHSNLHLLDDQTPTYNMMHTVSTDTSKDSSAFIESINTNKEHIFVKEEESEEIDFEHELNKTVISKSSNNKFEDTFINEQPIEDITNEKQCNEEIQIGTENISEDIVSETHTSEDILANKQLMKDKFVVYNQDSIDSSKNNSLTVENIEDIFVKDEQYEVTSYEHELYKTILSEISNNEFDKTLIKEEPKKDDYKKSTDDVTICHIFTQAGNTLKPTETQTESIVFLCHICPESFTLKRELYEHLKIHTYIVDAESSNDNNLTAENIEDIFVKDEHDLDIINNKFEETLIEEVPQKDSYMDSENYNNQKEDKSNDIGGNMLEHKETQRDSKDIQCPICPELFILNLDLYEHLKVHTLRHQIINDNQVRADHMEKKSIKELYEKTPFDHELYKCIKIDTEHISEETNCKFEENLIVEQSMKDSNMDSEEYYKNQKEKSSFILKRDMNPLVKTHTSIYQNLIDNQVHADNTNNAILETNSKNMEDICVKEEHRLDKSDISEEENVALVTSNTKFEPTYIKKQPMDCEDYNNPNENCKTSKIGTDNISKEKDVVSDTCNDKFEEILIKEQPIKDNYMDSDNYNNQNEKKCTETESSENSKEKYKQCPICNKPFKHKNSLECHMKAHEGMKDLECPKCHKLFVLKRCLLKHFKMCSFNQENSLISDMKQRQCPICDEIFSTHSNMRKHLKCTHDGIKNHHCNLCSKSFREKASLKYHMTSHTGQTGKFECSICRKSYTTKGSLNRHLNTHTSTHTNRTSSIQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -