Hrub084896.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- -
- Assembly
- GCA_963082715.1
- Location
- OY720466.1:26382645-26386087[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.009 2.3 11.1 0.8 1 21 157 177 157 181 0.92 2 11 0.071 18 8.3 1.0 2 23 190 210 189 210 0.96 3 11 9e-05 0.023 17.4 1.5 1 23 216 239 216 239 0.96 4 11 1e-07 2.7e-05 26.6 1.2 1 23 245 267 245 267 0.99 5 11 2e-05 0.0052 19.4 2.0 1 23 273 295 273 295 0.97 6 11 5.5e-07 0.00014 24.4 0.6 1 23 308 330 308 330 0.98 7 11 0.002 0.5 13.2 0.2 1 23 335 357 335 357 0.94 8 11 2.3e-05 0.0059 19.2 1.7 1 23 363 385 363 385 0.97 9 11 1.2e-06 0.00029 23.3 3.2 1 23 391 413 391 413 0.98 10 11 4.8e-07 0.00012 24.6 0.2 1 23 419 441 419 441 0.98 11 11 0.00015 0.038 16.7 2.3 1 23 447 469 447 469 0.95
Sequence Information
- Coding Sequence
- atgagtCGAAATTTGCAAAGTTTATCAGTATACGATTTTGGTAAAATATGCAGAACGTGTTTAAATACAGAAAACTTAATTCCattatatgaaaattgtaaaaaagaCTGTTTAATAGAAAAGATAATGTCAATATCTTTGGTTACAattacAGAAAATGATGCATTACCTCTTCAAATATGCACAAACTGTGAAAAAGAAATACAGAACGCATACAAATTCTCCCAAAGATGTTTAGAAGTTGAAAACGTGTTAAAAAACTGTTACAAACAATTCGAAAAcgacaaaaaaacaacagaaaacattgatataagtttaaaaaacgtaagaaaaacacgaaattcgatGAAGAATCCCACGGAAAACAACATAAAAGTGGAAGAAACAGACGATGACAATTTCAGTGATACTATTTTAGAACCAAATATAGTCGTTAAAACCGAGTTAGAACCCCAAAAAACTAAAACTTACGAATGTAAAAAGTGTTTAGAAGTGTTTCCCAactttcaattattaaaaatacatcgTGAAGAAAAAAAACATCCGCCGAATAGTTACAGTCGGAAAACTTGTAAAATCTGTTCGAAATCTGTTGGATATTCTCGTATGAATCAACATATGCGAGTTCATACGTCTGAAAAACCATATTGTTGTGAAATTTGTGGAAGTAGATTTAGTATAGGGAGCAATTTGAGGCGACATATGATCTCTAAACACTCAAAAGAAAAGCCGTATAAGTGTAGTGATTGTGACAAGGGTTTTACGCGATTAGGGTTATTGAAAGATCACCAACGTAGACATACGGGAGAAAAACCGTATATTTGCAACTTTTGTGGCAAAGCATTTGCCCATTTGAGTAGTTTTAggactcatttatttattcatgctaaaaatggCGAATCTTCGAATCAAATTCCCGGTCACAAATGTGACGAATGTGACCGAAGCTTCGCTACAAAAGCGTTGCTAAAAGCTCATTTATTAATCCACGGCGAAAAAAAGTTTTTGTGTAGTGTCTGCGGCCGTGGTTTTGTCAGTatgatattattaaaaagtcataataaAGTTCATACTGGTTTAAAACCATATAGTTGTCAAATTTGCAACAAAAGTTTTTCGCATATTGGTAGCTTAAAATCTCATAGTTTAATTCATACGGGTCAGAAACCATTTGTTTGTGATGTATGTAATCGTGCATTTACGCAACGGAATCACTTAAAGTATCATTTACGCACGCATAGTGGAGAACGGCCATTTTCTTGTGGCGTGTGCGGAAAACGCTTCGCCCTAAATGGAAATTTGACAGTACATTTAAGAACGCACACGGGAGAGACGCCATATTTATGCCCGATTTGCCAAAAGGGCTTTCATGATTCGAGCAGTATGAAAAAACACAAGAAAGGTCATGGAAATGGAGGAAATTCTGcccaaaatataataaatagtcAATAA
- Protein Sequence
- MSRNLQSLSVYDFGKICRTCLNTENLIPLYENCKKDCLIEKIMSISLVTITENDALPLQICTNCEKEIQNAYKFSQRCLEVENVLKNCYKQFENDKKTTENIDISLKNVRKTRNSMKNPTENNIKVEETDDDNFSDTILEPNIVVKTELEPQKTKTYECKKCLEVFPNFQLLKIHREEKKHPPNSYSRKTCKICSKSVGYSRMNQHMRVHTSEKPYCCEICGSRFSIGSNLRRHMISKHSKEKPYKCSDCDKGFTRLGLLKDHQRRHTGEKPYICNFCGKAFAHLSSFRTHLFIHAKNGESSNQIPGHKCDECDRSFATKALLKAHLLIHGEKKFLCSVCGRGFVSMILLKSHNKVHTGLKPYSCQICNKSFSHIGSLKSHSLIHTGQKPFVCDVCNRAFTQRNHLKYHLRTHSGERPFSCGVCGKRFALNGNLTVHLRTHTGETPYLCPICQKGFHDSSSMKKHKKGHGNGGNSAQNIINSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00769033;
- 90% Identity
- iTF_00769033;
- 80% Identity
- -