Hrub062352.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- -
- Assembly
- GCA_963082715.1
- Location
- OY720460.1:24385603-24390453[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7e-05 0.018 17.7 1.3 2 23 153 174 152 174 0.98 2 11 4.1e-06 0.001 21.6 4.6 1 23 180 202 180 202 0.97 3 11 9.4e-05 0.024 17.3 2.5 1 23 208 230 208 230 0.97 4 11 1e-05 0.0025 20.4 1.1 1 23 238 260 238 260 0.98 5 11 0.00027 0.069 15.9 1.4 1 23 266 288 266 288 0.98 6 11 0.0013 0.32 13.8 2.2 3 23 296 316 294 316 0.96 7 11 6.2e-05 0.016 17.9 4.5 1 23 322 344 322 344 0.97 8 11 2.2e-06 0.00056 22.4 1.7 1 23 350 372 350 372 0.95 9 11 7.8e-05 0.02 17.6 6.8 1 23 378 400 378 400 0.97 10 11 1.4e-07 3.5e-05 26.3 1.7 1 23 406 428 406 428 0.97 11 11 1.2e-05 0.0029 20.2 4.7 1 23 434 456 434 456 0.99
Sequence Information
- Coding Sequence
- ATGGACATTAATATAACCAATATTTCTAACGTAGAGAAGTTATGCAGATCTTGCTTAGAAAATAGCGAAGATATGCAGTCAATATTTAATACTGAAGAAGTATTTGGCAAATTCTACACAATTTCAGAAATGTTTGAGAGTTGCACTAACATTAAGATACAACAAGAAGATGGCTTACCtttaaaactttgtatttcttGTATTTGCCAACTAACTAAATCTTACGCCTTCAAGCTACAATGCGAAAATTCGGATATAAATTTACGAGAATTTATCATAAAAAGCAAAAATGAGCctgtaaaaaatattggaacaccaaatgaaaattttattaataatatagataCTGAAAGTACATGCGAAATAAATGATTCCGTAAAAATATGTGATATTGAAGATATAGTAAGTATTAAAGAAAATAACGAAcatagaaaagaaaataaatatcattcaAAGCAATGCCcgtattgtttaaaattatttaaaaaaactgccAACCTCACATTACATATAAAAACACACACTAATGACCGACGACATTGTTGTCCTTTTTGTCCAAAAAAATTCATACAAGCTTCAACTTTAACTCGTCATTTAAGATCGCATACTGGCGATAAACCATATTCTTGTAAAACATGTTTGGCGAAATTTTCAACTCGGGACAACTTAAAAAGACATGAATCAAAACATATCGTAGGATTACTTCAAAAATATACTTGTGAGGTCTGCCAGAAAACTTTCAATTCTAGTAGTGGTTTAAGTTACCATAAAAATGtacatatagaaaataaaaactacagTTGTGATATTTGCGAAAAAAGATTCGTCGCACATGCAAATCTTCTACTCCATAAAAAGAGGCACAATAAAGAATATAGTCATTTATGCCCCATATGTggtaagaaatttttaaccatgGGGGAATTCACTCGCCATTCACGTAAACACACTAACGAAAAACCGTTTCATTGCGATACCTGTCAAAAAAGTTTCACCACTAATGTTAGTCTAAATCAGCATAAACTGAGACATGGCGGAGTGAAACCTTTTCTTTGTTACGTGTGTTCGAAACGATTCGcaactaaaacaaatttaaatgaacacATGCGATCTCATACCGGAATAAGGCCCCATCATTGTTCTGTTTGTGGAAAAGGATGTAACTCAACTAGTGATTTAAAGAAACATTTACGAACGCACAGTGGTGAAAGACCATTCTTCTGTGAAGAATGTAAAAAGTCGTTTGCGAGAAGAGAGAGTTTAAAAGTTCATATGAGATCCCACAGTGGGGCGAAGCCCTACGAGTGTAAATTGTGTAAAAAGAAATTTGGACACAATGGGAGTCTATCGAAACACATGAAAAAACATTAG
- Protein Sequence
- MDINITNISNVEKLCRSCLENSEDMQSIFNTEEVFGKFYTISEMFESCTNIKIQQEDGLPLKLCISCICQLTKSYAFKLQCENSDINLREFIIKSKNEPVKNIGTPNENFINNIDTESTCEINDSVKICDIEDIVSIKENNEHRKENKYHSKQCPYCLKLFKKTANLTLHIKTHTNDRRHCCPFCPKKFIQASTLTRHLRSHTGDKPYSCKTCLAKFSTRDNLKRHESKHIVGLLQKYTCEVCQKTFNSSSGLSYHKNVHIENKNYSCDICEKRFVAHANLLLHKKRHNKEYSHLCPICGKKFLTMGEFTRHSRKHTNEKPFHCDTCQKSFTTNVSLNQHKLRHGGVKPFLCYVCSKRFATKTNLNEHMRSHTGIRPHHCSVCGKGCNSTSDLKKHLRTHSGERPFFCEECKKSFARRESLKVHMRSHSGAKPYECKLCKKKFGHNGSLSKHMKKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00769034;
- 90% Identity
- iTF_01104961;
- 80% Identity
- -