Basic Information

Insect: Harpalus rubripes
Gene Symbol: -
Assembly: GCA_963082715.1
Location: OY720451.1:1839329-1844823[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.7e-05 0.0095 18.6 0.7 1 23 149 171 149 171 0.95

2 15 0.0018 0.44 13.3 1.1 3 23 179 199 178 199 0.99

3 15 7.4e-05 0.019 17.7 0.1 1 23 304 326 304 326 0.98

4 15 0.027 6.7 9.6 0.2 1 23 332 355 332 355 0.98

5 15 1.9e-05 0.0049 19.5 4.1 1 23 381 403 381 403 0.98

6 15 0.0021 0.54 13.1 0.1 1 23 418 440 418 440 0.95

7 15 0.0052 1.3 11.9 2.3 1 23 446 469 446 469 0.95

8 15 0.039 10 9.1 2.2 2 19 477 494 477 495 0.96

9 15 1.7e-05 0.0044 19.7 4.0 1 23 504 526 504 526 0.97

10 15 0.15 37 7.3 0.3 2 23 532 553 531 553 0.97

11 15 1.2e-05 0.0031 20.1 0.4 1 23 561 583 561 583 0.98

12 15 0.0052 1.3 11.8 0.2 3 23 591 611 589 611 0.97

13 15 0.00017 0.042 16.6 0.3 1 23 617 639 617 640 0.95

14 15 0.013 3.2 10.6 2.3 1 23 654 676 654 676 0.96

15 15 0.00087 0.22 14.3 0.2 1 20 1020 1039 1020 1042 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.7e-05	0.0095	18.6	0.7	1	23	149	171	149	171	0.95
2	15	0.0018	0.44	13.3	1.1	3	23	179	199	178	199	0.99
3	15	7.4e-05	0.019	17.7	0.1	1	23	304	326	304	326	0.98
4	15	0.027	6.7	9.6	0.2	1	23	332	355	332	355	0.98
5	15	1.9e-05	0.0049	19.5	4.1	1	23	381	403	381	403	0.98
6	15	0.0021	0.54	13.1	0.1	1	23	418	440	418	440	0.95
7	15	0.0052	1.3	11.9	2.3	1	23	446	469	446	469	0.95
8	15	0.039	10	9.1	2.2	2	19	477	494	477	495	0.96
9	15	1.7e-05	0.0044	19.7	4.0	1	23	504	526	504	526	0.97
10	15	0.15	37	7.3	0.3	2	23	532	553	531	553	0.97
11	15	1.2e-05	0.0031	20.1	0.4	1	23	561	583	561	583	0.98
12	15	0.0052	1.3	11.8	0.2	3	23	591	611	589	611	0.97
13	15	0.00017	0.042	16.6	0.3	1	23	617	639	617	640	0.95
14	15	0.013	3.2	10.6	2.3	1	23	654	676	654	676	0.96
15	15	0.00087	0.22	14.3	0.2	1	20	1020	1039	1020	1042	0.93

Sequence Information

Coding Sequence: ATGGAGGAAGGCGGTTTCACACTATGGCATGACGGCAATGGGGCCGTTGTGTCTCGAGAGGAGGTGATATGCGGCATCGATAATGGATGCGCTATCATGCAAGCAGATGGGGACGAGGCGTACGATGACGTCTGCGAGGAGGTGGTGGTGCAGCAGGACACAGCAGAGACAATAGTCCCTGAGCAAGATGCAGACCAAGTTGTCTACCTCGCAGGAGGGAATATGATTGTTATGAACCAGGCCGGGGGGCCTGTATCCTTCCAGGATAACTTTATGGAGTGTCAAGTGACTGAAGAAGTAATCACGGACGACTGGGTTCAATCAGGAGGCGACGAACGTGTTGAAATCCCCGTCGGAGAAGTGGGCGCCGAGCAACAGATCGAATACGACGACGCCGAAGTCCCTCTCCCAACAGACCAAGACGAATACACAGCATCCCGGCCGTACCCGTGCGACTTCTGCAGCCGGCGCTTCCGGAAGAAGGCCAACCTGATGAACCACATGGTTGCGCACCAAACGGACCGGCCGCATGGCTGCAACCTCTGCGGTGCCCGCTACATCCGCAAGTGCGACCTCATGAACCACCTTAAAATACATGCTTATGTTCCTGATCCAGATGCCCTAGACGAGGAGGAACTACCGCCCCTCAACGACGAGGAAGACGTTGACAAAACCAAAAAGAAAAAGACCAAAAAGAGGAAGCAACTCCCAACCCCTCCAAAACCAAAAATCAAACAGGAACAGATCGACTCAGACGAACGATACGACACGCCGTCTCGATCGTACAACTACGTCGAAGAAGACGTTAGATTGCTCACAGAAATGGAGAACCATGTCAACGCAAACGCTTACGAAGTTGAAGCAACAATGGCTGAAGCCAGATACCCAATACTCGACCCTCGAAAACCTTTCGTTTGTCAACACTGTGGAGTTGCATTCGCTCGCGAAAAGGCCCTCGCCTCTCACGCGAGAATCCACGCCGGAGATTCGCCGTTCGAATGCGAAACCTGCAACGAAATGTTCTGGGACGTTTCAGTTTTACGCGAACACGTCCGAACAAAACACGGCGGCATGACCAACGACTCCGACTACGAAGATATTGACGATGACGACTATGTTGATGACTCTAAATACGGAGATTTTTACTGTAAAGTCTGCGGAATGCGATTTCATCGAACAGATCTCCTTCGAAGACACATGAGAAACCACGACGATGTTAAAGAAGAATTCACCACTGATACAGAATACGCCCATGTGTGCAATGTATGCGGGCAGAGCTTTAACGAAGCTTTAGACTTATTAGCTCATGCGGAAAGCCACGCCCGAGCAATGGGCCATCGATGTATGCTTTGCGGAGAATGTTTTCAAGATGAATCTAATATGGCGAATCATGTCATGCAACGGCACGGCAAAAATATGCCTCCAAATACTTGTATGCTTTGCGGAAAAACTTGCAAAGACCGACGAACTTTACTCAAACATTCGTGGGATCATTCTCgggaaaaactattttcttgtTCCAAATGTGGAAAGAGTTTTCATAATAAAGCAAGACTAAAACGACATATGGTGTCCCATAGGAATAAAGCTGTACAGTGTGATGTATGCGGCGACGATTTTCCAGACGGGAGGTCGTTAATGAACCACAGACACAGTCACTCAAATATTTCAGGGAGGCAATTTCCGTGTAGAGAATGCGGCAAAACTTTTGGAAGTCGGAGTTCCCAACAAATTCATATTCGAATTCATACTGGAGAACGACCATACGGTTGTAGATTTTGTTGGAAGGCCTTTGCAGATGGCGGAACTTTGAGAAAACATGAAAGAATACATACTGGGGAGAAGCCCTATGCGTGTGCGGTGTGCCCCAGGGCTTTCAACCAACGAGTAGTGTTACGCGAACACATTCGCTCGCACCATTCTGGCCCTGATCCTCAATTTTCGCACACCATGACACCTTATTGTTGTTCTGTTTGTAACGACATGTTTTCTACATCACAAGACCTTATAATTCATCTCATACACCATTGTGACCTCAACACAGCCATGAAACGGCAGCCCCAAGTTGGTCCGCGCAAATACAAACGACGTAGAAAACTTAAACCACATGAATTAGAGCTCATCTCAAACAGAGTTGATAATGACAATGATATATATTCAGATTCAGATGAAAAGAGCAAAAGGAGAAGTCCTAAAAAAGTCAAAACTCCGCCTGTAAGCAATAAATCCAATATGGATAAAGAATATGAAAGTGTGTTTCAAAGTTTTGAATCTGCAATACAAAACATGAGCTCTCTGGTCAATTCGAAACCGTCTGGCGCCCGAGGAAGAAAAAAAGTGAAACCAACAGAGACTCAAATGTCTTCGCTGCCGTCTCGACCAAAAATGATCCACACCCAAAAGACGAGAGTGCCGGTAGACACCGCGGACGGCAAGGGAAAGCACAAAACTAAAACGTTAATCACGCGGACAACCCCTGTGGAAGTGAAAGAAAAAATCCCTTATGCCGGTGAGAGAAACCGCCCTAGAACCAAAAATGTCAGCTACCATGTGCTCCAGGCTGATAAATTACCTTTAGCGACTTTTGCAGATGAAAACGAGGAAGAAGACCAAATGGAACACAATGAAAGCATGGTAATAATAAAACCAGACCCAGACGCGCCCCACCACAACAACGAGTTGGAAATGGAATACGAAAGCGTTGAGACGGAAATCCCGGACGTGGCGAACGAGGAGACAGTCCTCGCGCAGATAGAGGAGCCCCCGCGGCAGGAGCAAAGCCCTGAGCCGACCGCCATGATAAAAGTTACCAAAAACGTAGGCAAAAGCAACAACAGCCTGTCCCCCGGCCGGCATCTGATCGGCCCCGGCCACAAAGTCATCCGCATCGTGAAGGGCGGGCTGCTTGTGAGTAAGCACATTAAACGCGAGCCTGAATTGCTTGTTCCAGATGTGGAACAACCCGCGCATGCGCAACTGAACATCAAACAGGAGGTTATGGAGCCAAGCCCGCTGCATGAGCTTGCAGAGCTCTCCATGCAGCATGCGCAGAATCAGTTCCGGTGCGAGATGTGCAGTGCCACTTTCACGGATCGGTCGCAGTTGTTGATGCACGTGCCCGTTCACATCTGA
Protein Sequence: MEEGGFTLWHDGNGAVVSREEVICGIDNGCAIMQADGDEAYDDVCEEVVVQQDTAETIVPEQDADQVVYLAGGNMIVMNQAGGPVSFQDNFMECQVTEEVITDDWVQSGGDERVEIPVGEVGAEQQIEYDDAEVPLPTDQDEYTASRPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGARYIRKCDLMNHLKIHAYVPDPDALDEEELPPLNDEEDVDKTKKKKTKKRKQLPTPPKPKIKQEQIDSDERYDTPSRSYNYVEEDVRLLTEMENHVNANAYEVEATMAEARYPILDPRKPFVCQHCGVAFAREKALASHARIHAGDSPFECETCNEMFWDVSVLREHVRTKHGGMTNDSDYEDIDDDDYVDDSKYGDFYCKVCGMRFHRTDLLRRHMRNHDDVKEEFTTDTEYAHVCNVCGQSFNEALDLLAHAESHARAMGHRCMLCGECFQDESNMANHVMQRHGKNMPPNTCMLCGKTCKDRRTLLKHSWDHSREKLFSCSKCGKSFHNKARLKRHMVSHRNKAVQCDVCGDDFPDGRSLMNHRHSHSNISGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPQFSHTMTPYCCSVCNDMFSTSQDLIIHLIHHCDLNTAMKRQPQVGPRKYKRRRKLKPHELELISNRVDNDNDIYSDSDEKSKRRSPKKVKTPPVSNKSNMDKEYESVFQSFESAIQNMSSLVNSKPSGARGRKKVKPTETQMSSLPSRPKMIHTQKTRVPVDTADGKGKHKTKTLITRTTPVEVKEKIPYAGERNRPRTKNVSYHVLQADKLPLATFADENEEEDQMEHNESMVIIKPDPDAPHHNNELEMEYESVETEIPDVANEETVLAQIEEPPRQEQSPEPTAMIKVTKNVGKSNNSLSPGRHLIGPGHKVIRIVKGGLLVSKHIKREPELLVPDVEQPAHAQLNIKQEVMEPSPLHELAELSMQHAQNQFRCEMCSATFTDRSQLLMHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01104958;
90% Identity: iTF_01104958;
80% Identity: -