Basic Information

Insect: Harpalus rubripes
Gene Symbol: -
Assembly: GCA_963082715.1
Location: OY720460.1:41424984-41441373[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 4.3e-05 0.011 18.4 1.6 1 23 255 278 255 278 0.92

2 12 0.0004 0.1 15.4 2.1 1 23 282 304 282 304 0.98

3 12 1.5e-05 0.0037 19.9 3.2 1 23 312 334 312 334 0.98

4 12 0.00017 0.042 16.5 2.2 1 23 340 362 340 362 0.98

5 12 9e-07 0.00023 23.7 1.3 1 23 371 393 371 393 0.97

6 12 1.7e-05 0.0044 19.6 1.4 1 23 399 421 399 421 0.96

7 12 0.00062 0.16 14.8 0.2 1 23 427 449 427 449 0.99

8 12 5.9e-05 0.015 18.0 2.3 1 23 455 477 455 477 0.98

9 12 0.00011 0.028 17.1 0.8 2 23 484 505 483 505 0.97

10 12 4.7e-06 0.0012 21.4 2.6 1 23 511 533 511 533 0.98

11 12 8.5e-07 0.00021 23.8 0.0 1 23 539 561 539 561 0.98

12 12 4.2e-06 0.0011 21.6 1.0 1 23 645 667 645 667 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	4.3e-05	0.011	18.4	1.6	1	23	255	278	255	278	0.92
2	12	0.0004	0.1	15.4	2.1	1	23	282	304	282	304	0.98
3	12	1.5e-05	0.0037	19.9	3.2	1	23	312	334	312	334	0.98
4	12	0.00017	0.042	16.5	2.2	1	23	340	362	340	362	0.98
5	12	9e-07	0.00023	23.7	1.3	1	23	371	393	371	393	0.97
6	12	1.7e-05	0.0044	19.6	1.4	1	23	399	421	399	421	0.96
7	12	0.00062	0.16	14.8	0.2	1	23	427	449	427	449	0.99
8	12	5.9e-05	0.015	18.0	2.3	1	23	455	477	455	477	0.98
9	12	0.00011	0.028	17.1	0.8	2	23	484	505	483	505	0.97
10	12	4.7e-06	0.0012	21.4	2.6	1	23	511	533	511	533	0.98
11	12	8.5e-07	0.00021	23.8	0.0	1	23	539	561	539	561	0.98
12	12	4.2e-06	0.0011	21.6	1.0	1	23	645	667	645	667	0.99

Sequence Information

Coding Sequence: atggTGCTGACAGTGGAAGATAAAGTGGTGATAGTATTATTACTAGTAGATAATAACAGAAGTTTTAGAGAAGCGACAGAAGAATTTAATACAAGACATCCTGGGCGAAATTTATCTTATGCTATGGTAGGAAAAAATTTTCGGCGTTTTAAAAATAGTGGATCAGTTTGCaaagaaaataacgaaaatttGATGTGTAACCAGAATAATGAAATTGATGTCTTAGCCTTTGTTCACCTTCATCCAAGATCAAGTTTACAAAGCATTGCGCAAAATTCAGGACTTACAAGattttgtttagaatattttattccattGGTTTGTCTTCATGAATGTAATAAAGATATAAACGAAACAATTCCCCTAAGTAACATTGTGAGGAGATTAGCTGATATTGAGatAAAACACAATGATGGTCTTCCAGATCAGATATGTGAAACTTGTTTGGAGGAATTAAAACgaacatataaatttattacaatgatACGAGACTCCGATCAATCACTTCGGTCTGTAGAACTGTTGTATCCACTAAAAACTGAGGATTTTACAGATAAATTAGATGAGGAAGATAGAAATGATATTACTAATATATACATAACTAGTGAAATAGAAGTAGAGGCGAACGTTCCTCTTAAACTTGAACCAGATTCAGTGGTAAGTAAAGTTGATTTTGATGATGATCCCATGAATAATGAGCCAGATTCGGAAGACATACCACAAGACCATGACTACAGTAAACGAGTAGTAATTGAAAAGAAGTTTAGTTGTGAAACTTGtgataaagaatttaaaaataaaaaaaaattaaccgcACATAAGATCGAATCAcatgattttaaatatgaatgtaattTCTGTAGCAAACAATTTCCAGCTAAAAGACATTTAACAGTGCATTTAAAAGCACACCGTACAGATGAACAAAAACCCTACAAATGTCCACAATGCGACAAGAAATATTCTTACGAATACCAACTAAAACagcatttatttaaacattcaGAGAAAAAACCATTTCCATGTACCAAATGTGAGAAAGGCTGCCTCACTGCTGAAAGTTTAAAACGGCACATGAGGACTCATGATGAAAACTACGAAAAGCCAATCCACACTTGCGAAGTGTGTGGAAAAACGTTTTCATATCCGAGTTTTCTTGCTGAACACATGAAGAATCATACTGGTGAAAAGCCCTATTTATGTTCGCTATGTGGAAAAGGTTTTCGGCAAAAAGGAGCTTTAATTTATCATCACAGAAGTCATCAAAATGTTCGACCATATTCATGTGAAGTCTGCAAAAGTTCATTCGTTTCCGCGGGAATTTTAAAGGTTCACATGAGGAGACACACCAACGAAAGACCATACGTTTGTGATATCTGCGATCGAGGATTTCGGCAATCTTCTGATTGCAAAAATCACCGAAGAATACATTTTGGAATAAAGTTACAAGAATGCGGTgtttgtaagaaaaaaatgtcaacaaaaggTCAGTTAACTATTCACATGAGGATGCATACTGGTGAAAGACCATTTCCTTGTCACGTATGTTTGAAAAGATTTTCAACTAAATCAAAATTGGTCAAACATGTCCGTGTCCACACCGGCGAGAAGCCGTATGTCTGTGAGGTATGTGGCAAAGGATTTGCCCAATCGAGTTCATTAGTAGCTCATGTAAAAATTCATGATCGAGAAGGCAATGACAACGTAgccaaaaagaaaacaaaagtaaatttaactATTACTCCTGCAGGAAATGATAACGTAGCCAAAAATAAAGCAAAAgtaaatttaacaattaatCCCGAAGGAAATGATAACGtatgcaaaaataaaacaaaagtaaatttaactATTAGTCCCGAAGGAAATGATATAgccaaaaagaaaacaaaattaaaggTAACTATTAATCCTGAAGAAAAATCATCAACGTACTCTTGCGGTGAATGTGAGAAAACatttaaacaacttttaaacTTACAATTACATCTAAAAACACATGCTATTTCTGCCACAAATGCTAGTAAAAACAATGATAacgtaataaaaaatgtaaaaacttgA
Protein Sequence: MVLTVEDKVVIVLLLVDNNRSFREATEEFNTRHPGRNLSYAMVGKNFRRFKNSGSVCKENNENLMCNQNNEIDVLAFVHLHPRSSLQSIAQNSGLTRFCLEYFIPLVCLHECNKDINETIPLSNIVRRLADIEIKHNDGLPDQICETCLEELKRTYKFITMIRDSDQSLRSVELLYPLKTEDFTDKLDEEDRNDITNIYITSEIEVEANVPLKLEPDSVVSKVDFDDDPMNNEPDSEDIPQDHDYSKRVVIEKKFSCETCDKEFKNKKKLTAHKIESHDFKYECNFCSKQFPAKRHLTVHLKAHRTDEQKPYKCPQCDKKYSYEYQLKQHLFKHSEKKPFPCTKCEKGCLTAESLKRHMRTHDENYEKPIHTCEVCGKTFSYPSFLAEHMKNHTGEKPYLCSLCGKGFRQKGALIYHHRSHQNVRPYSCEVCKSSFVSAGILKVHMRRHTNERPYVCDICDRGFRQSSDCKNHRRIHFGIKLQECGVCKKKMSTKGQLTIHMRMHTGERPFPCHVCLKRFSTKSKLVKHVRVHTGEKPYVCEVCGKGFAQSSSLVAHVKIHDREGNDNVAKKKTKVNLTITPAGNDNVAKNKAKVNLTINPEGNDNVCKNKTKVNLTISPEGNDIAKKKTKLKVTINPEEKSSTYSCGECEKTFKQLLNLQLHLKTHAISATNASKNNDNVIKNVKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -