Hrub084554.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- -
- Assembly
- GCA_963082715.1
- Location
- OY720466.1:17672546-17678791[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 3.4e-06 0.00085 21.9 1.1 2 23 74 96 74 96 0.96 2 23 4e-05 0.01 18.5 3.8 1 23 102 124 102 124 0.98 3 23 1.5e-05 0.0039 19.8 4.4 2 23 144 165 143 165 0.97 4 23 5.7 1.5e+03 2.3 0.4 2 23 272 290 271 290 0.81 5 23 2.8e-05 0.0071 19.0 4.2 1 23 296 318 296 318 0.96 6 23 0.00012 0.03 17.0 5.4 1 23 324 346 324 346 0.97 7 23 0.00014 0.035 16.8 4.8 1 23 352 374 352 374 0.98 8 23 0.018 4.6 10.1 1.3 1 23 380 402 380 402 0.98 9 23 0.073 18 8.2 2.2 1 23 415 437 415 437 0.91 10 23 5e-06 0.0013 21.3 3.8 1 23 443 465 443 465 0.98 11 23 0.42 1.1e+02 5.8 0.1 5 23 611 629 609 629 0.95 12 23 0.036 9 9.2 0.0 2 23 979 1000 978 1000 0.97 13 23 0.39 98 6.0 0.3 2 23 1037 1057 1036 1057 0.94 14 23 4.8e-06 0.0012 21.4 3.7 2 23 1064 1085 1063 1085 0.97 15 23 0.31 78 6.3 0.1 2 23 1157 1177 1156 1177 0.94 16 23 0.0028 0.71 12.7 0.4 1 23 1192 1215 1192 1215 0.97 17 23 0.7 1.8e+02 5.1 0.3 2 23 1296 1316 1295 1316 0.96 18 23 1.2e-05 0.003 20.2 4.8 1 23 1322 1344 1322 1344 0.98 19 23 0.00014 0.036 16.8 2.5 1 23 1350 1372 1350 1372 0.98 20 23 0.0055 1.4 11.8 1.8 2 23 1566 1586 1566 1586 0.97 21 23 0.015 3.7 10.4 2.0 1 23 1592 1615 1592 1615 0.96 22 23 0.00043 0.11 15.3 2.8 1 23 1621 1643 1621 1643 0.98 23 23 2e-05 0.005 19.5 1.8 1 21 1656 1676 1656 1677 0.95
Sequence Information
- Coding Sequence
- ATGGAGGACATATCTATTAAAGAAGAGTGTCAAGAGACTCCCTATGAACATGAATTCAGTGAAAGTGTGGTGGAAAGTACAACGAAAACAGAATGCGAAGAGAATATAGCATTAAGAACAAATAATCATGGATTTGAAGAAATTCTTATTAAAGAAGGACTGCACTCTGAAGATAGCAACAATCAGATTGAagaaaagtgtaatgaagagaaaaaaAGACAATGCCCTATTTGCGGTAAAATATTTTCTCAGTTTAGTAATATgagaaaacatttaaaatatacacatagtggaatcaaaaatttccgttgtaatttatgtaataaatcgttTAGAGAGAAAACTAGCCTTAAATATCACATGACAAGTCATGCTGAACGTGTTAATATGATAGAACATATCAAAACACATTCTGAAAAACAAGATTTGCAGTGCCCAACATGTCACAAATCGTTTACACGAAAAATGTATTTGTACAATCATTTAAAAACGCATGCCTTAAGTGATGAAAACAATGACAATCAGGTGCACGCAGACACTAACAAAACAAAAGACGACATTGCGAttatagaaacaaataataaaaatgtggtAGATCATAAACTTGATAAAACAACAAAATGTATAGAAGATAATATATTATCGGAaacaattaatgaaaaatttgaggAAATTCTTATTAAAGACCAACCAATGGAAGACAATTATATGAACACTGAAGATTGCAACAatcaaaatgaagaaaaatgtaatGAAGAAATGCAAACCAGAGGAAAAAAAGAGCATGAAATTAAGAGAAAAGCGAAAAGGGTTCAGTGTccaatttgcaaaatatttacaacacaATTAAGAATACATATGACCATACATTCAGAAACCAAagattttctttgtaaaatatgtaataaacgaTTTAGGCATAAAGTCAGTCTTATATACCATTTAAGAACACATACTGCAAACAAAGATTTTAATTGTCATATATGTAACAAGCCCTTTAAACATAAAGAGAGTCTGAAATATCATTTGACAATTCATACtggagacaaaaattttcattgcaatttatgtaaaaaatcttTTACAGAAAAGGCTAGTCTGAAGTATCACATGACAACTCACATTGGTAAAAAGGAATTTGAGTGTGATATATGTCATCAGTTATTGCCAAATAATAATTCCCTAAAATATCACTTAAGCACTCATACTGGTAGTGATGATTGCAGAAAATTAACAAAGAAATTTCATTGTATTCTTTGCACTAAATCATTTGCGTATAAAAGAACTTTGGCATATCATATTAAAGCCCataatggtattaaaaattttaaatgcccGAAATGTCACAAGGCATTCGCACAGAAAAGCGTCCTGACAAGGCATTATAAGAGTCATACAATGAATAGCATTAAACCAAATATTAATATAGAAGGCATTTCTGTTAAAACACGCGAAATTGATGAAAGTCTAGTGTATATAGCAACGAAATCGAATGTAGAACATATTTCGGAAGATAATATTGTACCGGGAACACCTAATCAAAAAAATGATAATATCAAAGAAGAACCGATGGAAGACAACTACATTGTTCCTGaagattacaacaatgaaaacgAGAAAAAATGTAATGAGGAAGTCAAAATTACACAATGTGTACTTGATACTAGTCGAAATTGTTCTAAAATTAACCAAACTGATACCAACTATATTTCggatgaaaataatataaaacatcgtaaatttgaagaaattcttATTGAAGATAACTATTTGGACATTAACGATTgcaatattcaaaataagaCAATTACACAAGACATCCAAAGCCGTATTTGTCCTGAGTTGTTTGCACTGAAAAATAACTTgtacaaacatttaaatatacatacattgagtgatcaaaaccaaatttcaacaaaatcgAATGTGGAACATATCTCGGAAGAAAATATTACATCGGGAACACGTCAaaaatttgaagatattaaagaagaaccgatGGAAGACAACTACATTGTTCCTGaagattacaacaatgaaaacgAGAAAAAATGTAATGAAGAAGTCAAAATCACACAATGTGTACTTGATACTAGTCGAAATTGTTCTAAAATTAACCAAATTGATACCAACTACATTTCGCatgaatataaaattgaagACAACTATATGGACTTTAACAATTgcaatattcaaaataagaaaattgtaCTAGACATTCAGAGCTCAATTTGTCCTGTGTTTACACTGAAAAAGGACCTAGAACATTTAAAAATACCTACATTGAGTAATCAAAACTTTAGTTACAATCAGATACATACAGATGGCACTAATATGGCGTATGAAGACAGTGCAATTgtagaaacaaataataaaaatatggaagACATTTTTGTCAAAGAAGAACAACGTGAAGAATTTCCATATGAGCATGAACTCGATAAAAGTGCATTGCAAATTCCAACGAAAACAGATTGTATAATCGATACTAAGGTAAAATATTCTAAAACGAACCGAATTGTTACGGAACATATTTTAGAAGAAGAGAATATAATATCGGCAGAAAGCGAAATTGATAAAAGTGTAGAGCAAATTGCTTTGAAATCGAATAATATTGTATTGGGAACACCCAGTCTAAAAATTGATGAAATTAAAGAAGAGCCGATGGAAGACAACTACATTGTTCGtgatgattacaacaatgaaaacgAGAAAAAATGTAATGAAGAAGTCAAAATCACACAATATGTACTTGATGCTAGTCAAAATTGTTCTAAAAATAACCAAATCGATACCGACTACATTTCGGAAGAAGCCAATATAAGTAATcataaatttgaagaaattcttATTGAAGAACAACCAATAAACGACAACTACATGGACTTGAATTTGTTAGGACATACAGAAACACCCTCTGGAAGCAAAGATATGCAATGTCCAATATGTCCTGAGATATTTACATGGAAACTAGACCTCTACGagcatttaaaaatacattcatCGAATAATATAAACGACATAACAATTATAGAAACAAATAAGAAtgagaaaaaatgtaataaagacGAGCAAAccacaagaaaaaaaattaaagagaaAACAATACAGTGTCctatttgtaatatatttacaGAGCATGGTAATATGATAGAACATATCAAAACACATTCTGAAAAACAAGATTTACAGTGCCCTACATGCCATAAGACGTTTACACGAAAAATGAACTTGTACATACATTTGAAAACGCATCAAAACAATGCAGATAACACTgacaaaatttctataaaagaAGAGCTGTTTGAAAAAACTCATGAACATGAACTTTATAAAAGTGTAAAAGCCAACACAGAATATGAAGAAgagaattataaatatgaagaaaCTCTCAATGGAGATCAACCAAAGAAAGACAGCTGCACGAACTCTGGAGATTACAACAATACATTTAAGGATAAGTTAATACAGTGCCCTATCTGTAATATATTTACAGAAGCTGGTAATATGTTACAACACATGGAAACTCACCCTGAAAGCAAAGCTTTTCAAATAGActttcaaacaaaatattttaagtgtCCCATGTGCCCTGAGTCGTTTGCACTAAAAAGAGACCTGTACCCACATTTAAAAACAAGGCATACGTTGAGTAATCAGATCCTTACTTACAACCATAACATAGcaattgtagaaaaaaataatcaagAACATAAACTTGATAAAAGTGCAGAGCAAATtgcaacaaaatctaatatagaACATATCTCGggaataaataatcaaaaatttgaagaaatacttATTAGAGAAGAACCAATGAATGACACTTACATCCCTGAAGATTGTAACAATGAGAAACAAAAAGCTAGTGAGAAAAAAAGCCAGTGTCCTATTTGCAAAGTAGTTTTACTAAGTATTAATATGAAAAGACATCTAAAATCTCATACCGGACAAAAAGATTTTCGTTGTCATCTATGCAAAAAAGCATTTACACAAAAATCGTCTTTAGAATACCACTTAAAATCTCATAATGGCATAAAAGATTATGAATGCACAATATGCCATAGGTTTTTTGCAAAGAATAGCGTCTTGAAATCACacttaaaaatacatacaaagaATAGCACTGACATGCCTAAAGAAAAACCGATGGACTCTGAAAATTGCAACAAACTGAATTTGAAAGAAACCAATTTGAGaatagaaacaaatgaacaagacATTTctgttaaagaaaataaaaatatagtgtgGATAAAAAGTAATCGAGAATTTGAAGAAATCAAAGAAGAACCGATGGACTCTGAAAATTGCAACAAACAGAATTTGAAAGAAACCAATTTGAGAATAGAAACAAATGCACAAGACATTTCtgtcaaagaaaataaaactatagTGCCAGCAACAAGTAATCGAGAATTTGAAGAAATTGTTATTAAAGGACAACCGATTGATGACATCTCTATGGACTCTGAAAATTGCAATGAGAAACACACAGAAAAAGAAGATTGTTCTATAAGTCACAAATGGGTTGCAAAGAAAAGCGTTCTGGAAACAAATAGTAAAACTGAGCAAAACATTTCTGGTAAAGAGTTGTATAACAAAACTTCTTACCAAAATGATCCACTGGAAACATTTATTGTTGAAGAACAGCCGTTAGAAGAAAACTCGAACTCTGAAGCGGAAAAAGCAAAGTGTCCCATTTGTggaaaattgtttaaaaaacgtAGTATGAGACAACATGTAAAAACCCAtgctgaaaataaaaatttccaatGCAATTTGTGTAATAGATGGTTTACAGAGAAATTTAGTCTGAAATATCACATGATCAACACGCATACTGGTAAAAAGGAATTTGAATGCGAGATATGTCACAAGTTATTTCCAAATAATACTACCCTCAAGTATCATTTGAAAAATCATATTGGTAGTGATGGAGACAAGTCAAAAGCTTTTCGGTTTTCTTGTACACTTTGTAATAAGACGTTCACACAGAAAACTACTTTGCAATATCATATGAAAGTAAATTGTCTGATAGATCATTTACTAACTCATATGCCAACTCCAGAACGATCATTTTAA
- Protein Sequence
- MEDISIKEECQETPYEHEFSESVVESTTKTECEENIALRTNNHGFEEILIKEGLHSEDSNNQIEEKCNEEKKRQCPICGKIFSQFSNMRKHLKYTHSGIKNFRCNLCNKSFREKTSLKYHMTSHAERVNMIEHIKTHSEKQDLQCPTCHKSFTRKMYLYNHLKTHALSDENNDNQVHADTNKTKDDIAIIETNNKNVVDHKLDKTTKCIEDNILSETINEKFEEILIKDQPMEDNYMNTEDCNNQNEEKCNEEMQTRGKKEHEIKRKAKRVQCPICKIFTTQLRIHMTIHSETKDFLCKICNKRFRHKVSLIYHLRTHTANKDFNCHICNKPFKHKESLKYHLTIHTGDKNFHCNLCKKSFTEKASLKYHMTTHIGKKEFECDICHQLLPNNNSLKYHLSTHTGSDDCRKLTKKFHCILCTKSFAYKRTLAYHIKAHNGIKNFKCPKCHKAFAQKSVLTRHYKSHTMNSIKPNINIEGISVKTREIDESLVYIATKSNVEHISEDNIVPGTPNQKNDNIKEEPMEDNYIVPEDYNNENEKKCNEEVKITQCVLDTSRNCSKINQTDTNYISDENNIKHRKFEEILIEDNYLDINDCNIQNKTITQDIQSRICPELFALKNNLYKHLNIHTLSDQNQISTKSNVEHISEENITSGTRQKFEDIKEEPMEDNYIVPEDYNNENEKKCNEEVKITQCVLDTSRNCSKINQIDTNYISHEYKIEDNYMDFNNCNIQNKKIVLDIQSSICPVFTLKKDLEHLKIPTLSNQNFSYNQIHTDGTNMAYEDSAIVETNNKNMEDIFVKEEQREEFPYEHELDKSALQIPTKTDCIIDTKVKYSKTNRIVTEHILEEENIISAESEIDKSVEQIALKSNNIVLGTPSLKIDEIKEEPMEDNYIVRDDYNNENEKKCNEEVKITQYVLDASQNCSKNNQIDTDYISEEANISNHKFEEILIEEQPINDNYMDLNLLGHTETPSGSKDMQCPICPEIFTWKLDLYEHLKIHSSNNINDITIIETNKNEKKCNKDEQTTRKKIKEKTIQCPICNIFTEHGNMIEHIKTHSEKQDLQCPTCHKTFTRKMNLYIHLKTHQNNADNTDKISIKEELFEKTHEHELYKSVKANTEYEEENYKYEETLNGDQPKKDSCTNSGDYNNTFKDKLIQCPICNIFTEAGNMLQHMETHPESKAFQIDFQTKYFKCPMCPESFALKRDLYPHLKTRHTLSNQILTYNHNIAIVEKNNQEHKLDKSAEQIATKSNIEHISGINNQKFEEILIREEPMNDTYIPEDCNNEKQKASEKKSQCPICKVVLLSINMKRHLKSHTGQKDFRCHLCKKAFTQKSSLEYHLKSHNGIKDYECTICHRFFAKNSVLKSHLKIHTKNSTDMPKEKPMDSENCNKLNLKETNLRIETNEQDISVKENKNIVWIKSNREFEEIKEEPMDSENCNKQNLKETNLRIETNAQDISVKENKTIVPATSNREFEEIVIKGQPIDDISMDSENCNEKHTEKEDCSISHKWVAKKSVLETNSKTEQNISGKELYNKTSYQNDPLETFIVEEQPLEENSNSEAEKAKCPICGKLFKKRSMRQHVKTHAENKNFQCNLCNRWFTEKFSLKYHMINTHTGKKEFECEICHKLFPNNTTLKYHLKNHIGSDGDKSKAFRFSCTLCNKTFTQKTTLQYHMKVNCLIDHLLTHMPTPERSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -