Hrub061856.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Harpalus rubripes
Gene Symbol
-
Assembly
GCA_963082715.1
Location
OY720460.1:13617278-13632226[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0039 1 12.2 1.5 2 23 156 177 156 177 0.98
2 15 0.00023 0.057 16.1 3.8 2 23 184 205 183 205 0.97
3 15 6.2e-05 0.016 17.9 5.4 1 23 214 236 214 236 0.97
4 15 9.3e-06 0.0023 20.5 6.6 1 23 304 326 304 326 0.97
5 15 0.0039 0.98 12.3 1.7 3 23 344 365 342 365 0.95
6 15 0.00038 0.097 15.4 8.9 1 23 429 451 429 451 0.96
7 15 0.00065 0.16 14.7 1.8 1 23 457 480 457 480 0.95
8 15 3.3e-06 0.00083 21.9 0.9 1 23 485 507 485 507 0.98
9 15 3.5e-06 0.0009 21.8 3.3 1 23 520 542 520 542 0.97
10 15 6.4e-07 0.00016 24.1 0.4 1 23 549 571 549 571 0.97
11 15 2.9e-05 0.0073 18.9 1.6 3 23 583 603 581 603 0.92
12 15 0.00028 0.07 15.9 4.2 1 23 609 631 609 631 0.99
13 15 1.2e-05 0.003 20.2 1.8 1 23 637 659 637 659 0.96
14 15 3.2e-07 8.2e-05 25.1 0.3 1 23 665 687 665 687 0.99
15 15 0.00024 0.06 16.1 0.1 1 23 693 717 693 717 0.92

Sequence Information

Coding Sequence
atgattaacaAAGATAATGCATTGCCGTTCGACAAGATTTGCCGATCTTGTATGACAGAAGGCAATCAAATGAAATCAGTATACGAGTCCAATACAGATTCGGTGCAGCTAGCAGAAATGATAATGGCTTGTGCTTCGATACAGGTCGTGTCAGGAGACGGCTTACCGGGTCTCATTTGCCCAAAATGCGAAGAGCAGCTAAACATCGCCTACGGATTCAAGCAACAATGCGAACGTACAGACGCCACCCTTCGAGAATACACCAATCACACATCAGGACAAATAAAAGAAGAGTCCGAATCATTAGATATAGTTGTAAAGCCCGACTTAGACGTACTAGAAATAtacgataatgataatgatggTGGGAGAGATGATGATGACGATCAGTACTCTGGATCTGAGAGTGTACATAGTAATTATTCCACGACGGTTCGGAGAAAAAAGAAACAGCAGAAGAGTCGACAGTGTCGGTTTTGTAGTAAGGTGTTGTCGACGAAGGAGGGACTCAGGTTGCATGAAAGGCGCCACACTGGCGAGAAATTGAAAACGTGTCCAGTCTGCCACTCTACATTCGCCAAATCAAACCATCTCATCCGCCACATGTCCATGCACAACAAACCTACAGACGAATACAAACACACCTGCGAGGAATGCGGTATGGGGTTCACAAAAGCGTCCCACCTCCACAAGCATCGGCGCGAGCACAAAGCCGCCGCGCGGGAGCGAGAAGACGAGGCTGAAGCTGAAGCGCCCGCTGAAGATGTGGATATGGCCGATGCGGAGCAGCAGCAAGAACAAACGGTGGCGGTTAAAAGTGAAGTGGATAGTGATAATGAAGTGGCGGGACCGGGGAGTTCCACAAGGGCGAAGCTAAGGCCCAAGAAGGAACCGGTTGAAGAGAAGGTACATTCTTGTAAGaTCTGCTTGAAAACATTTAACAAATCATCCCACCTAACCCGACACATGCTAACGCACGGCGTggaaaagaaagaaaaacaaGAACCAAAAGAGAAGAAATACATGGCGTGCGAGTTTTGCGATAGAAAGTTCGTGTACCGCAAGAGTTTTCTTCACCATATTCAGCTCGAACACCAAATCTCTGAGGATAGTGATACGCCGCTCAGTGAATACGCCACCATTGTTACAAAGACGAAGGATCCCAACACATCTGGCAACGCGGAGAAcgGTGGCGAAGGTGTTGTAGGGGGCGACCCCGACCGCCAACTAAACCCCGAGGACGACTTCGAAGAATTCATGCGTCAGGAAGAAGCCAAAAAACTCCACGTCTGCCACGTTTGCAACCACAAATTCACTCGGGCGAACCATCTTACCCGCCACATGACTCTCCACCGCGCCGTTCTCATCCACAAGTGCGACCGTTGTGAAAAAGCCTTTATGACCCCGGAACACCTCGCCACACACGTCCAGGAATACCACGTGGACCGCCCGTACGTCTGTTCGTTATGTAACAAACCTTTCAGCAGAGGAGAACACTTAATTCGACACTTAAAAGTCCACGATAAAGACAACGGGGATGGCAATGCGCCCGACGAACACAAATGCTCGATTTGTGAAAAGGTTTTCGCAAGGAGTGATCATTTGGCGCGACATACAAAACTGCATTTGGCGCAAGATAAGAGACATGTCTGCGGCGAATGCGGGAAAGCGTTTAACCGGTTGGATAATTTGAGAACGCATGCCCGAATACATACCGGCGTCAGAGATCCACAAAGATTACATTTGTGTATTTATTGTGGTAAAGAATTCAACAATTCCAGTAATATGATTGTACATATGCGGCGACACACTGGCGAACGGCCGTATAAATGTGGCCAATGTGGTAAAGGATTTCCGCGGTCGCATGATTTAAAATGCCACGAAAGAACGCATAGTGGGGAGAAGCCCTATTTGTGCACCCTCTGTGGTAAAAGTttcaataaaagtaataaacttTTACGTCATACTCGCGTTCACACAGGCGAACGGCCGTATGTCTGTTCTTTATGCGGAAGAGCGTTTACCCAATCGAATGATTTAGCGCTGCATATGCGCAGACATACCGGAAGTAGGCCGTATGCATGTGGGATGTGCCCGGCGAGATTCATCCAATCAGGTCAGCTAAAAGCTCACCGTAGAAGTCAAGGTCATTGGTTGGAAACTCAACCAGAACTAAAAGGAGCACACCGAGTAACTCCCGTTACTCCTTTGGTAAACCCGCCGCCTATAAAATTCAAGACAAGAGTCCAACGGATCAAAGAGGAGCCGACAATTTTAGGCCACACCATAGGCGTAGGAGTAGGGGTTAATTTAGTGGGTGTTGTGGCCGCGGCTGCAGCCGCTGCAGCTGCAGCTGCAAAAGAACAGGAAATGCCAAACCAAAATGTGGTGTACGCCACAAAAGAAGAAACGGTTCATAATTTCAGTGTGACGAATCTGTCGAGGGATCCTACTCCAGGTGCGCCGACTTTTGTACAGCCTTCAATTCCCGAACCCGGAACATCGTTTTCAAATAGTATTGCAATGACTTCTAACTCGTTTGCTGTCAGTAGTGAAGGGTATACCTACCAAACGTACGGCTAG
Protein Sequence
MINKDNALPFDKICRSCMTEGNQMKSVYESNTDSVQLAEMIMACASIQVVSGDGLPGLICPKCEEQLNIAYGFKQQCERTDATLREYTNHTSGQIKEESESLDIVVKPDLDVLEIYDNDNDGGRDDDDDQYSGSESVHSNYSTTVRRKKKQQKSRQCRFCSKVLSTKEGLRLHERRHTGEKLKTCPVCHSTFAKSNHLIRHMSMHNKPTDEYKHTCEECGMGFTKASHLHKHRREHKAAAREREDEAEAEAPAEDVDMADAEQQQEQTVAVKSEVDSDNEVAGPGSSTRAKLRPKKEPVEEKVHSCKICLKTFNKSSHLTRHMLTHGVEKKEKQEPKEKKYMACEFCDRKFVYRKSFLHHIQLEHQISEDSDTPLSEYATIVTKTKDPNTSGNAENGGEGVVGGDPDRQLNPEDDFEEFMRQEEAKKLHVCHVCNHKFTRANHLTRHMTLHRAVLIHKCDRCEKAFMTPEHLATHVQEYHVDRPYVCSLCNKPFSRGEHLIRHLKVHDKDNGDGNAPDEHKCSICEKVFARSDHLARHTKLHLAQDKRHVCGECGKAFNRLDNLRTHARIHTGVRDPQRLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCGQCGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHTRVHTGERPYVCSLCGRAFTQSNDLALHMRRHTGSRPYACGMCPARFIQSGQLKAHRRSQGHWLETQPELKGAHRVTPVTPLVNPPPIKFKTRVQRIKEEPTILGHTIGVGVGVNLVGVVAAAAAAAAAAAKEQEMPNQNVVYATKEETVHNFSVTNLSRDPTPGAPTFVQPSIPEPGTSFSNSIAMTSNSFAVSSEGYTYQTYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00769012;
90% Identity
iTF_00769012;
80% Identity
-