Basic Information

Insect: Harpalus rubripes
Gene Symbol: -
Assembly: GCA_963082715.1
Location: OY720466.1:19652766-19683285[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.00058 0.15 14.8 6.0 1 23 138 160 138 160 0.97

2 19 0.00018 0.046 16.4 3.7 1 22 291 312 291 312 0.95

3 19 7.5e-06 0.0019 20.8 1.1 1 23 467 489 467 489 0.97

4 19 8.4e-06 0.0021 20.6 2.7 1 23 495 517 495 517 0.99

5 19 6.1e-05 0.016 17.9 0.6 1 23 523 545 523 545 0.98

6 19 1.1e-05 0.0028 20.2 3.0 1 23 551 573 551 573 0.99

7 19 4.6e-07 0.00012 24.6 2.7 1 23 579 601 579 601 0.99

8 19 0.0065 1.6 11.5 1.4 2 23 668 689 667 689 0.97

9 19 0.002 0.52 13.1 3.1 1 23 695 717 695 717 0.98

10 19 4.1e-05 0.01 18.5 3.0 1 23 722 744 722 744 0.97

11 19 6.8e-05 0.017 17.8 2.4 1 23 749 771 749 771 0.98

12 19 5.1e-05 0.013 18.2 4.7 1 20 776 795 776 798 0.95

13 19 0.0051 1.3 11.9 1.7 3 23 806 825 805 825 0.97

14 19 8.5e-07 0.00022 23.8 4.4 1 23 831 853 831 853 0.99

15 19 0.00025 0.063 16.0 4.7 1 23 859 881 859 881 0.98

16 19 0.47 1.2e+02 5.7 0.1 2 21 888 907 887 908 0.92

17 19 1.6 4e+02 4.0 0.1 2 13 1051 1062 1050 1064 0.87

18 19 9.1e-07 0.00023 23.7 1.2 1 23 1071 1093 1071 1093 0.99

19 19 1.8e-07 4.5e-05 25.9 1.4 1 23 1099 1121 1099 1121 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.00058	0.15	14.8	6.0	1	23	138	160	138	160	0.97
2	19	0.00018	0.046	16.4	3.7	1	22	291	312	291	312	0.95
3	19	7.5e-06	0.0019	20.8	1.1	1	23	467	489	467	489	0.97
4	19	8.4e-06	0.0021	20.6	2.7	1	23	495	517	495	517	0.99
5	19	6.1e-05	0.016	17.9	0.6	1	23	523	545	523	545	0.98
6	19	1.1e-05	0.0028	20.2	3.0	1	23	551	573	551	573	0.99
7	19	4.6e-07	0.00012	24.6	2.7	1	23	579	601	579	601	0.99
8	19	0.0065	1.6	11.5	1.4	2	23	668	689	667	689	0.97
9	19	0.002	0.52	13.1	3.1	1	23	695	717	695	717	0.98
10	19	4.1e-05	0.01	18.5	3.0	1	23	722	744	722	744	0.97
11	19	6.8e-05	0.017	17.8	2.4	1	23	749	771	749	771	0.98
12	19	5.1e-05	0.013	18.2	4.7	1	20	776	795	776	798	0.95
13	19	0.0051	1.3	11.9	1.7	3	23	806	825	805	825	0.97
14	19	8.5e-07	0.00022	23.8	4.4	1	23	831	853	831	853	0.99
15	19	0.00025	0.063	16.0	4.7	1	23	859	881	859	881	0.98
16	19	0.47	1.2e+02	5.7	0.1	2	21	888	907	887	908	0.92
17	19	1.6	4e+02	4.0	0.1	2	13	1051	1062	1050	1064	0.87
18	19	9.1e-07	0.00023	23.7	1.2	1	23	1071	1093	1071	1093	0.99
19	19	1.8e-07	4.5e-05	25.9	1.4	1	23	1099	1121	1099	1121	0.99

Sequence Information

Coding Sequence: ATGACTTTAAATCGTGAAATAAAGTGTAACAAGAAGGGCATAAAGAAGCTTGTGCAACAATGGACAAAGTGTATTAAAAAtaaatttaaacaaatcaGCTTAGAGACAAGTCTGCGATTAGAAACGAAAATCAAGAACGCACAATGCGACAAGAACATCAGAGCGCATGCGCAAGACGCCTCAGACACACCTGGACCAAGTAAAGaaattttcatCAAGGGTGCTGCGATAACCTATATAAAAACAGAAGACGCTCAAACAAAAGACAGTGAAGAACTTGGAGCTCTTGATCTCccatttgaagaaatttttattaaagacgAACCTGAAGATAATTCCGAAATTGAAGAATATATAATTGATAATAACGATACCGACACGTTACAACAAGATGAAACTGGTTCAAAAGGTTTTTGTTGTACAATCTGCAACAAAAGTTTTACTTTTAAGCGTTATTTGGACAATCATTTAAAGTCACatgaaACCGTCATCAAATTGGGGATTCCCCTTAACATCTGTTCGAGTTGCCAAAAGAATCTCcaatcatttagtaaatttaAACAAGTCAGCTTAGAGACAAGTTTGCGTTTAGAAGCGAAAATCAAGAACGCACAATGCGACAAGAACAGCAGAGCGCATGCGCAAGACGCGTCAGAAACACCTGGACCAAGTAAAGAATATACTCCTGTAGAGACAAAAACAAAAGACGCTCAACCTCAAACAAAAGACAGTGAAGAACCAGCAACACTTGATCCCcattttgaagaaatatttattaaagaagaacTTGAAGATAATGGCGAAATTGAAGAATGtataattgataataatgatactGACATGTTGAAACAAAAAACTGATTCGAAAGATTTTTGTTGTACAGTTTGCAACAAAAGTTTCACATTAAAATCTTATTTGAACAATCATTTAAAGACAATCATCAAACTTGGCATTCCTCTTCGGATCTGCTTTTCGTGTGAAAAAAACTTACAATCATTTAGCAAATTCAAAGAAGCCAGTTTAGAAAACAGCTTTCAACTAGAAAATCGCATTAAGAAAGTTATGGATTCATCAGAAAATACACAAGTGGACTGTGAAATGGATAGCGCTGAAACAGATGAATTAATATTACCATTAGAGGTTCAGATTACGGAAAAAATTGAAACAGAcgataattatttacaaattgacGATAGTATAGcagatattaaaaaagaaattaatgcCAAAAACGATCCTAGTGATAACGATGGTGTTTTAGAGCAATCTACAGATTCTGGTGAAGAtgaacacaaaattaaaaatgatcccACCGATAATGATCTTTTAGAGAACTCCACAAATTCAAGTGCAGAAGAAGATCttgacaacaaaataaaaactccCGTggttaaaaactttttttgttcTGTATGTGAAAAAGGCTTTACCAGAAACTACGATTTGAAAGAACATATGAATTTACACTCAGAAACAATGAATTACCAATGCAGAATTTGTGATAAGTATTTCACTCTTAGTAGGGGGTTAAAAAAACACATGAAAACTCATTCGAAAATAATGGAGTTCCAATGCCCAACTTGCAACAAACTCTTCTTGAGGAAAGATCAGCTCATTCGTCATATGGAAATACACACGGGAAAAAAACAAtttcagtgtaatttgtgtagTAGAATGTTTGCCAGAAAAGAACATTTGAAGGCGCATGAAAAGACTCATACTGGAGTGAAAGATTTTAAGTGTAACATGTGCGATAAGCTTTTTATAAGAAAATCTCAGTTGAATTCTCACATGAAAACTCACAGTGACAAGATGGCCGACAATACGGCCAGCGAAACTCAGAATCAGAACGTTGTAGATACTTCCCTAAACGAAAAAGTGTTTGAAGAAAACGAACcaaaatttgaacaaatatatattaaagaagaagTAGCAGATGATAACACTAGTGACGATGAAGTGAATGAAGGTGACAAAAAcgataaaaaaacaaagaaaattcaATGCCGTGAATGCGGCAAACAGTTATCAAATAAACGTACTTTAAGGTTTCACATGGAAACACATTCGGACAATCGAAATTTTTCATGTtctttttgtcaaaaaaatttcttacAAAGAAGATCATTAATGAGACATATGGAAACTCACAGTGGAAAAGATTTTGCATGCCACGTCTGCAAAAAAGTATTTACAAGGAGAGACGTACTAACGAGACATTCCCAAACACACTCTCAAAAGGTGTTCAAATGTGATACATGTGGAAAAGAGTGTTCAACTCTTTTTAATTTAGAAGCACATAAAAAAATACACAGTGACATAAAGTATCATTGTGATATTTGTGGTAAATTTTTCTCAACGAATTCTTATTTAAAAGATCATATGGAATGTCATAAACCAACGACGAGTTCATTATGTCAAATCTGTAATAAGTCTTTTTCGATGAAAGATCTTTACAGACATTTAAAAAGTCATACTGACGAAAGAAATTATGAATGTGAAATTTGTAATAAGTTTTTTAAACGTAAAGACCATTTGAGGTTACATCTAAAAACGCATAGTGATACAAAAGAATTTGAATGTTTTGTATGTAAAAAGAAGTTTAATCAAAAAGGGCATATAAAGAGACATATAACAACTcatattaaaaagaaagatttaCATTGTTCGGCGTGTAGTTtagtatttaaagaaaatgaCGAATTTGTGGCCCATATTCAAAGTATCTTCAAATTTGGTCTTCAACTGCGAATTTGTTCCATTTGCCAAGAAAAACTCCACTCCTTCAGCAAATTCAAACAAGACAGCGTGGAAAACATTCTCCGATTAGAAACACGTATCAGAGAGTCACAATTCGAAGATAAATCATCAGCAGACATGTCTATACATGCGCAAAATCAACCTAGCGACACTTCTGATTCGGACGATGAATCAATTGCTTTAGAACCGAACTTGCACAATTTCttagaaatatatataaaagaaGAACCACAAGATGAAAAAACACAGAACCAAAATATCGATGACTCAAAAATTCGAGAGTTTTATGATGACGTAATGCATAATTCTCAAGTACAAGACTTGTCAATGAGTAATAATGGAAATACATCGAATAGTGACAAAAATCCAACACCAGGAAAGAAAAAATTACAGTGCCCTATCTGCAGTAAACTGTTTAACGACCGAAAAGCACATACGCGAGTAAAAACTTATCAatgtaatatatgtaataaaatgttgACAAATAGTAGCAATTTAAGTAAACACCTCAAAATCCACAGCGGCGTAAAAGATTATCAATGCAAAATCTGCAATAAGATGTTCATTAGAAAAGACAAACTAAAAATCCACATGAATGTACATTTAAGAATGAATTTGAACCCTGAACTTGCCTCTTTAATGGATACATCTGATAGCACAATTGACACTACAACTGAGAGCACGGTAGATAATCATATGGACACAGACACTGAAACGAACACCGATAACGAATCTTTCGCTAAAAATAAAACAGATACGAAAGAAAATGAACAAGTTTCAACAAGCActgttcatataaaaattgaagattcAAATGATGACGCGGAAGATTCAGAAATGGCTGTTGATTACTCCAAACCTAATGTAATTGTAAAAACAGAACCTGATACGAACCAAGATGATTCGACAGGTATAATTGATTATTCCATACCTGatgcaaaacaaaatataacaacgaACAATACGCAAAATTATAGTGGAAGCCAAAATGTACAAGATTTTACAGACGCAATTGATAATTCCAAAATGCAAGATGTGCAAATTGTAACAAGCAAATCTTTTGCACAAAATGATGACGCAAATCAAAATGAAGACGCGTATAATACAACAAGTGCAAAcaatatgcaaaataataatgGAAGCCAAAATGTGCAAGATTTTACAGACGCAATTGATAATTCCAAAATGCAAGACGCGCAAGTTGTAACAAGCAATTCTTTTGCACAAAATGATGACGCAGATCAAAATGAAGATGCGCTTAATACAACAAGTGCAAACAATGTGCAAAATAATAGTGGAAGCCAAAATATACAAGATTTTACAGACACAATTGATAATTCCAAAATGCAAGACGCGCAAGTTGTAACAAGCAATTCTTGTACGCAAAATGATGAAGCAAACCAAATTATTGATTATTCCAAAACTGATATTGACGCGAACCAAATTGTGCAAAGCCCAACTTTTGCGAAAAATGATTGGGGAATCCAAAATATGCATGTTTTGGCAGGCTTAATtgcaaattattcaaaaatgcCTATTGAAAACCAAGATGAGAAAGATTCAAGACGTGTATCTTATGCTGCAAACCAAAATGAAAATTCTACAGGGCAAATTATTGATTATTCCTTGGAGAAAATGGCGCAAGATTTGCAGGTTTCAACAAGCACTACATTTGCGCAAAACAGCAGCCAAAATGTGCAAGATTATACCGGCTTAttggattattcgaatattgaCGCAACCTTAAATTCCGACGATTCAACCGATATAACCAATTATTCGAAAAATGAAACAGAAAACCAAAATGTGCTTGATTCGATAAATGCAGCTTATGTGAAAAGTGATTTTGAAAACGCAGCTTATGAGAAAAGTGATGATGACAACGAAGATGTGCAGGATTATACATGTTTTCCGCTAGATTTTGTGAAAACGGAAATACCTGATTCTTCGGACAGTGAAGCAGACTGA
Protein Sequence: MTLNREIKCNKKGIKKLVQQWTKCIKNKFKQISLETSLRLETKIKNAQCDKNIRAHAQDASDTPGPSKEIFIKGAAITYIKTEDAQTKDSEELGALDLPFEEIFIKDEPEDNSEIEEYIIDNNDTDTLQQDETGSKGFCCTICNKSFTFKRYLDNHLKSHETVIKLGIPLNICSSCQKNLQSFSKFKQVSLETSLRLEAKIKNAQCDKNSRAHAQDASETPGPSKEYTPVETKTKDAQPQTKDSEEPATLDPHFEEIFIKEELEDNGEIEECIIDNNDTDMLKQKTDSKDFCCTVCNKSFTLKSYLNNHLKTIIKLGIPLRICFSCEKNLQSFSKFKEASLENSFQLENRIKKVMDSSENTQVDCEMDSAETDELILPLEVQITEKIETDDNYLQIDDSIADIKKEINAKNDPSDNDGVLEQSTDSGEDEHKIKNDPTDNDLLENSTNSSAEEDLDNKIKTPVVKNFFCSVCEKGFTRNYDLKEHMNLHSETMNYQCRICDKYFTLSRGLKKHMKTHSKIMEFQCPTCNKLFLRKDQLIRHMEIHTGKKQFQCNLCSRMFARKEHLKAHEKTHTGVKDFKCNMCDKLFIRKSQLNSHMKTHSDKMADNTASETQNQNVVDTSLNEKVFEENEPKFEQIYIKEEVADDNTSDDEVNEGDKNDKKTKKIQCRECGKQLSNKRTLRFHMETHSDNRNFSCSFCQKNFLQRRSLMRHMETHSGKDFACHVCKKVFTRRDVLTRHSQTHSQKVFKCDTCGKECSTLFNLEAHKKIHSDIKYHCDICGKFFSTNSYLKDHMECHKPTTSSLCQICNKSFSMKDLYRHLKSHTDERNYECEICNKFFKRKDHLRLHLKTHSDTKEFECFVCKKKFNQKGHIKRHITTHIKKKDLHCSACSLVFKENDEFVAHIQSIFKFGLQLRICSICQEKLHSFSKFKQDSVENILRLETRIRESQFEDKSSADMSIHAQNQPSDTSDSDDESIALEPNLHNFLEIYIKEEPQDEKTQNQNIDDSKIREFYDDVMHNSQVQDLSMSNNGNTSNSDKNPTPGKKKLQCPICSKLFNDRKAHTRVKTYQCNICNKMLTNSSNLSKHLKIHSGVKDYQCKICNKMFIRKDKLKIHMNVHLRMNLNPELASLMDTSDSTIDTTTESTVDNHMDTDTETNTDNESFAKNKTDTKENEQVSTSTVHIKIEDSNDDAEDSEMAVDYSKPNVIVKTEPDTNQDDSTGIIDYSIPDAKQNITTNNTQNYSGSQNVQDFTDAIDNSKMQDVQIVTSKSFAQNDDANQNEDAYNTTSANNMQNNNGSQNVQDFTDAIDNSKMQDAQVVTSNSFAQNDDADQNEDALNTTSANNVQNNSGSQNIQDFTDTIDNSKMQDAQVVTSNSCTQNDEANQIIDYSKTDIDANQIVQSPTFAKNDWGIQNMHVLAGLIANYSKMPIENQDEKDSRRVSYAANQNENSTGQIIDYSLEKMAQDLQVSTSTTFAQNSSQNVQDYTGLLDYSNIDATLNSDDSTDITNYSKNETENQNVLDSINAAYVKSDFENAAYEKSDDDNEDVQDYTCFPLDFVKTEIPDSSDSEAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -