Hrub077046.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- -
- Assembly
- GCA_963082715.1
- Location
- OY720464.1:3434600-3435796[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 8.9e-06 0.017 17.4 0.4 12 44 74 103 69 103 0.89 2 9 0.59 1.1e+03 2.0 0.4 16 29 107 120 105 126 0.83 3 9 0.00069 1.3 11.4 4.3 8 41 128 158 124 161 0.85 4 9 3.5e-05 0.065 15.5 2.3 14 43 179 204 172 205 0.91 5 9 0.3 5.7e+02 2.9 2.4 17 39 210 229 207 236 0.73 6 9 7.9 1.5e+04 -1.6 3.4 15 33 236 254 226 263 0.71 7 9 0.081 1.5e+02 4.8 0.6 17 29 271 283 259 298 0.72 8 9 0.02 37 6.7 1.3 16 40 298 319 296 323 0.77 9 9 0.42 7.8e+02 2.5 0.1 15 29 334 348 327 362 0.74
Sequence Information
- Coding Sequence
- atgaaagacaTTTCTATTAAAGAAGAGTGTCAAGAGACAACTTATGAACATGAACTCAGTGAAAGTTTAGTGCAAAGTGCAACAAAAACAGAATGCGAAGAGAATATAGCATTAAGAACAAGTCATTACGGatttgaagaaattattaaagaaCCGGACTCTGAAGGTAGCAACAGTCAGATTCAGGAAAATTGTAATGAAGAAGAAAACTCCGTGATCTCTGATGAGAAAAAAAGACAGTGTTCTGTTTGTGGGAAAATATTTTCACAAGCTAGTGCTATGAGAAGGCATTTAAGAAATTTACATTCTGGAATCAAAAAATTTCATTGCTCTTTATGTAATAAAGCGTTTGCAGAGAAATATAGTCTCGAATATCATAAAAGAATTCATACtggtaaaaaagaaaattttgagTGTTCTATCTGCCATAAGACGTATGCAACGAAAAACGTACTGAAAAGACATTTAAATACTCATACAATGAATAACACTGACGCAACGAAGAAGGACAGTTCAGTTTGGAGTAATGATAATGAGAAAAAAAGTCAGTGTCGTATTTGTGGTAAATTTATACGGCACACGAATATGAAAAAACATTTAAGAAATACACATGATGGAATCAAAAATCATCGTtgtaatttatgtaataaatcatttattgaGAAGGCTAGTCTGAAGTATCACATGACAACACATATTGGTAAAAAAGAATTTGAGTGTGATATATGTCACCAGTTATTTCCAAATAATAACTCCTTAAAGTGTCATTTAAACACTCACGTTGGTAGTGATGCTAACAAACCAAAAGATTATCAATGTAGTCTGTGTTCCAAATCATTTTCACGTAAACAACGTTTTGAAGACCACATGGATGTTCataatggtattaaaaactatcAATGCAAGATATGTCAAAAGAAATTTGCAATGAAAGGCTCCCTGGCTAGACATTTAGAGAAACATAAACAGAGCGATCAGGAAGATGCAAAACGAGGTAGAAAAGATTTTGAGTGCCCGAAATGTCATAAGTCGTTTGCCGTGAAAAACTACCTGtctatacatttaaaattgcatTTATTGGATGATCAGACATTTATTGACAATCAGATGCAGGCAGGGCCGTTCCTAGCGGGCGTGCAATGCAGGCCTGCACGCAGGCGGCGAAAAGGTGGTGCGGTCTATAAGTTGAACGTATAA
- Protein Sequence
- MKDISIKEECQETTYEHELSESLVQSATKTECEENIALRTSHYGFEEIIKEPDSEGSNSQIQENCNEEENSVISDEKKRQCSVCGKIFSQASAMRRHLRNLHSGIKKFHCSLCNKAFAEKYSLEYHKRIHTGKKENFECSICHKTYATKNVLKRHLNTHTMNNTDATKKDSSVWSNDNEKKSQCRICGKFIRHTNMKKHLRNTHDGIKNHRCNLCNKSFIEKASLKYHMTTHIGKKEFECDICHQLFPNNNSLKCHLNTHVGSDANKPKDYQCSLCSKSFSRKQRFEDHMDVHNGIKNYQCKICQKKFAMKGSLARHLEKHKQSDQEDAKRGRKDFECPKCHKSFAVKNYLSIHLKLHLLDDQTFIDNQMQAGPFLAGVQCRPARRRRKGGAVYKLNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00767499;
- 90% Identity
- iTF_00767499;
- 80% Identity
- iTF_00767499;