Hrub056957.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Harpalus rubripes
Gene Symbol
pol
Assembly
GCA_963082715.1
Location
OY720459.1:22947224-22960359[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.6e-08 1.6e-05 26.8 0.0 1 40 774 814 774 818 0.88

Sequence Information

Coding Sequence
ATGTCAAATCCACCCATCCTCACATTCCCTGACTTTACCAAAAAATTCATACTAACAACAGACGCTAGCGATTACGCTATGGGCGCGGTCCTCTCACAAACACAAGACGGAATAGAAAAACCTATTTGTTATGCCTCTAAAACTTTCAACTCTGCAGAATGTAATTACAGCACTGTCGAGAAAGAACTCAAAGCCATAGTATGGGCCAttcaaaatttctataactATCTTTGGGGTAGAAAATTCACAATAAGAACCGACCATCGTCCTCTTGTATGGCtttttaacatgaaaaatgCCAACCAGAAGTTGATGAGATGGAAAATAGAACTcagtgaatataattttgatatcgAATACATTCAGGGCAAGACAAATAAAATTGCAGATTTTCTAAGCCGAATTCGCGAACCTTTcacaatacaaaatatcaaaGATTCATCAACAAACTCAAATACTGACGGCACAAAACATAGTGACCAAGAAAACCCAGTAAACGGaatgaaaattttagaaaatcgCTCAAACATTGCCAACAAACAAATTACATTTGAAACGCAAAacgaattcaaaattaatatgaagaaaatgtttgaaaacaaaCAAAGACTAGAAGTTCTATTAGAATCAGGAAAAGAGAACGaacaaatattagaatttttgaaacaatATATTGTCCCACAAGTTAGAAAAGTAGACCAAATTGTAGACGATATAGAAGATCAAGCAGAACaaaatgaaattgtttattCATATCATTATGGAAAAACAAATCATAGAGGAATAAAAGAAACCTATgacaaattaaaacaaaaatactattggcctaatatgattaaaacaataacagaatttattaataattgtgaaatttgCAAAACTTGCAAATATGATAGGAAACCAATCAAAATTAATGACATTCTTACCGAAACCCCAAATCTGCCCTTCGAAATTATTAACGCAGATTTACTAACATTAGACGGGAAAATATTCCTAACCATCCTAGACCAATTCTCAAAATACACCCGAATATACCCATTGAAATCCAAAACAGCTAAAGAAATATGCGATCACATAGAATGCTTTTGCAATAGTTATCAGTATCCAAACAAATTAATTTGCGACCCAGGCAAAGAATTTGACAACCtaacattaaaaacattttgtcacaataaatatattcatttacaCATTACTTCAGCAGGTAATCCAAAATCCAATCAAATAGAGAGATTTCACTCTACATTAATCGAACATATGAGAATATTATTCAAAAGATTTCCCgaaaatacattaaaacaaattatcgAACAAGCCATGCACGCCTACAATAATTCAATAAGTGCAACCACGTCATTAACACCCAACGAAATTCTGTTTGGTAAATCATACGCAAACAAATTTCCCTCAAAACAAGAAACATTACAAGAACGATTACAAACATACCAAGAAAATAAACACAATGCCAAAAGCAATGGAATAGTTGAAAGGTTCCATTCTTCCCTTATAGAACACATGAGAATCATTAATCAATACCCGATAATAAAAACTCCACTGCTTAAAGAAAGAGTAAATTACGCTTTAATAGCTTACAACAACAGTATTCACTCTACTACCAAAAGAACACCTTTAGAAAATGTATTTGGACCAATTTCAAACCAAAATTTAAAACCAGATGAAATACAAATCGACGAATACCTGCAAAAACGTACTGAAATTCTAAAACAAATCAATGAACAAATAGGAAATAATGCCCTCGATATAGATGCACAGGTGCAGCAGAATGTACCTGGTACTGAAGAAGACATTAAAGGGACTGATCAAGATATAGTTCTTCCAGTCAATGATATTAGATCATATCTTATACCTGTTGGACTAAGGGTAGGGTTTGAGATTGATCAAACAGGGCATGCTAGTGAAGCCCATAACAGAACATTTGACACTGAgacggaaaacatattttaccAATTACTCTACAAAGTAGGTGATGAAAAGGTCGACGATGATGTCCAGGGTAAAACAACATCTGAAATTGTTAAGCAGATAGAATCAAACCCAGATACTATCATATATTCCGACTACTCCTCGTTGGCCTTTTCTCAAACCATAAACATATTATCAAATACTATGGTATCACTCAGCAATCAAGTTTCAGACCTTGATGGAAGGGTAATATCCCTATTAACTGCTTTAGCAGTAAGAGAAGCTGAAGAGGCAAAACCACCTAGAAAAGCAGCTTATAATGTCCCTGAGAAGGTGAAGACGGACACCATAGTTAGACGATACAAAAAGAAAATCGGAATTTATTTCATGAATTACACTAAAGAAAACTTAACTAAAGCACTCGATGATATTAAAAAAGGCAAGAAAAGTTTAAGACAGGCTGCAGAGTATTATAGAGTGCCAAAGTTTACATTACATGATAAGATTAAGGGAAGAAAAGGCAAGAAACTTGGCGGGCAAGGCGCAATTTCAGTTGAAGAAGAAAGAATTTAG
Protein Sequence
MSNPPILTFPDFTKKFILTTDASDYAMGAVLSQTQDGIEKPICYASKTFNSAECNYSTVEKELKAIVWAIQNFYNYLWGRKFTIRTDHRPLVWLFNMKNANQKLMRWKIELSEYNFDIEYIQGKTNKIADFLSRIREPFTIQNIKDSSTNSNTDGTKHSDQENPVNGMKILENRSNIANKQITFETQNEFKINMKKMFENKQRLEVLLESGKENEQILEFLKQYIVPQVRKVDQIVDDIEDQAEQNEIVYSYHYGKTNHRGIKETYDKLKQKYYWPNMIKTITEFINNCEICKTCKYDRKPIKINDILTETPNLPFEIINADLLTLDGKIFLTILDQFSKYTRIYPLKSKTAKEICDHIECFCNSYQYPNKLICDPGKEFDNLTLKTFCHNKYIHLHITSAGNPKSNQIERFHSTLIEHMRILFKRFPENTLKQIIEQAMHAYNNSISATTSLTPNEILFGKSYANKFPSKQETLQERLQTYQENKHNAKSNGIVERFHSSLIEHMRIINQYPIIKTPLLKERVNYALIAYNNSIHSTTKRTPLENVFGPISNQNLKPDEIQIDEYLQKRTEILKQINEQIGNNALDIDAQVQQNVPGTEEDIKGTDQDIVLPVNDIRSYLIPVGLRVGFEIDQTGHASEAHNRTFDTETENIFYQLLYKVGDEKVDDDVQGKTTSEIVKQIESNPDTIIYSDYSSLAFSQTINILSNTMVSLSNQVSDLDGRVISLLTALAVREAEEAKPPRKAAYNVPEKVKTDTIVRRYKKKIGIYFMNYTKENLTKALDDIKKGKKSLRQAAEYYRVPKFTLHDKIKGRKGKKLGGQGAISVEEERI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-