Hrub076525.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- -
- Assembly
- GCA_963082715.1
- Location
- OY720463.1:39548635-39556069[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.6e-08 3.4e-05 25.7 0.0 3 42 63 101 61 104 0.90 2 2 7.9 4.8e+03 -0.4 0.0 17 24 191 198 187 199 0.86
Sequence Information
- Coding Sequence
- ATGTTCTGTGGATGGGTAAGGCGATATCCTCTATTTGTTTGTCGAGATGTAGATAGAAGTATGGACCCAGACGCTGTAATGgcTGCTAAAGCGGTTTATTGGTACTACATTGCCAAGTACACTGAATTTTTGGATACTACGCCGAAAGTAAGAGTCAGGATAACTGAAAAGGCTCCCTGGTCTTCTGACAGCCTGGAAAAAGCTATACAGCTTGTTGATGGAGGTTCTTCAATAAGAAATGCTGCTAAGGTAATGGGGATCCCATTTTCAAGCCTTCAAAAGAGGATAAAAACAGGTTCTACCTTAGAAGCACATCTAGGACGATTCACTGTCTTTAATGCTGAGGCAGAAACCGAGCTAGCAAAGTTGGTGAAGAAAATGGCAAATATTTTCTATGGTTGCATTGCCAATCAAATAAGAATAGTGGCTTTTGAATATGctgaaaaattgaatttgaagCACAATTTTAATCAATCTTCAAAAATGGCTGGAAGCGATTGGTTGCATGCATTTATGACTAGACATAACATTTCTATTAGGAAACCGGAGGCGACCAGCATAAACAGAATAACATCTTTTAATAAAGCCTGTTCTTTGAGCTACTTGGCCAGCTGA
- Protein Sequence
- MFCGWVRRYPLFVCRDVDRSMDPDAVMAAKAVYWYYIAKYTEFLDTTPKVRVRITEKAPWSSDSLEKAIQLVDGGSSIRNAAKVMGIPFSSLQKRIKTGSTLEAHLGRFTVFNAEAETELAKLVKKMANIFYGCIANQIRIVAFEYAEKLNLKHNFNQSSKMAGSDWLHAFMTRHNISIRKPEATSINRITSFNKACSLSYLAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00766412;
- 90% Identity
- iTF_00766412;
- 80% Identity
- iTF_00766412;