Hrub072265.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- clz9
- Assembly
- GCA_963082715.1
- Location
- OY720462.1:38325744-38327788[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-09 1.9e-06 29.8 0.0 3 34 20 51 18 56 0.92
Sequence Information
- Coding Sequence
- atgCCGAGgaaatatataagaaaaactaAACGTGGCGTAGGTGGGCGGTGGACATTAGAAAATCTTGAAAAAGCCGTACAAAATGTAACGGAAGGAAAAATGACATTACGTGTTGCTTCGGAAACGTTTGGGATACCCAAGTCTACACTAGGATTGAAAATAAAAGGATGGAAAGGAAGAAAAGTATCAACAACGAAGGGTGGTGGAGGGAGGAGCACAGACCTAGGTGAGGCAGTAGAACAGCGgttagtaaaatatttaaaagtccTGCATAAAGCTGGTTTCGGTTTTTCGAAACGGGAAGTACAGGGAGTGGTTGAAAAGTTTGTTAAAGATTATGGTTTAGAAACTAGATTTAAGAATGGAATACCAGGACATGATTGGTTCAAATCTTTTTGTTTGCGCCATAGGCTCTCACTAAAAAAACCAGAAAAATTGGAAAGCTCTAGATCAAGGCAGTCAAGTGATCcatatataatttatgatttttacacaaaagtagacaaaataattaaaacatatcaCTTGGAGAATGCTCCCGAACGTATATTCAACTGTGATGAGACGGGATTCACATTAGATCCAAGTAATACAAAAATTGTCTCACCAGTCGGGCAGTCAACTAAACGAATAACATTTGGAACTGGAAGAGATTCAACGACAGTATTATTTTGCGTGGCTGCAGATGGATCTAAATTAGCACCTCTTATCCTTCACAAAGGAAAACATAAATGGAACTCTATGATTGGTAAGAAGGCGTACCCAAATACGAGTTATCATGTATCGGACAATGGATGGATGACTGAGGAAGTTTTCAAATCATGGTTTAAAAACGTATTTGTACCGAATGTGCAATCTCCTGCATTATTGATTTACGATGGACACTTATCGCATATTAGTGTTGATCTGGTTGAAAGTGCCATTGAAAATAACATAATTATTCTTAAGTTACCGCCTCACACATCACACATATTACAACCGTTGGATGTTGCTGTATTTAAAGGCATAAAGAACAAGTGGGATGTTCTGCTTGCAGAATGGTGTAGACATAACTATGGCAAACGATTGAGTAAATCAGAATTTGCGGACTTAATTGGTCAGGTTTGGACTGATGTGAATTCTCAAACAATAAAGAACGGATTTCGGAAAACTGGTATTTACCCTCTAAATAAGGATGTTATACCAAGAACAAATTTTGACCAGGACAAACTAGATCGATATGATTCTATGAAAAAAGCACAAGATGATGAAAATGGATCTACCAATCAAAATGACATTATTTCGCAAGAACCCATAATTGCAACTCCCTCGACCAGCCAAAAAAACCTTTCATGCTCATCTGATTCACGTGTTTCTCTGTTTTCACAAAATATGGAAATTCCTCAAACTGTAATTTCAccaagtaaaatttttgaaaatattttactttctaCTGTTAAACAGAGTCCAATTGCTGATAAAAAGaacaaaaagaaaattaaagaatCAGTCAAAACAAAAACCATGAGTAAGAATatggaaaaaaacaaaaacgataaaagcaaaaaaattaaaactaataaaaaagaaattaaaacggATAGTACAGATAGTGAAGAAGAAGTGGAAGTTACATCTGGTGAAAGTTCTGCATATGAGATTGAAAGTGAAGACGGAGAACCTTCTTTAGTTTCACCTactgttgaaaatataaaaaagggTTCTTTTATATTGGTGAAATTTAAAGGTGGTAAAAGAAATGCAAGTAATTACTTTTATGCGTGTATTGTTCAAAACATTGAAGAAGAATTCGACGATATTACAGTTATGGCGCTAAAATGTCTTGacgaaacaaaaaaaattttattactaacgAAAATGACATATCTtcaattaattttgaacaaattTAAAGccattaatgaaatatttgaaaaataa
- Protein Sequence
- MPRKYIRKTKRGVGGRWTLENLEKAVQNVTEGKMTLRVASETFGIPKSTLGLKIKGWKGRKVSTTKGGGGRSTDLGEAVEQRLVKYLKVLHKAGFGFSKREVQGVVEKFVKDYGLETRFKNGIPGHDWFKSFCLRHRLSLKKPEKLESSRSRQSSDPYIIYDFYTKVDKIIKTYHLENAPERIFNCDETGFTLDPSNTKIVSPVGQSTKRITFGTGRDSTTVLFCVAADGSKLAPLILHKGKHKWNSMIGKKAYPNTSYHVSDNGWMTEEVFKSWFKNVFVPNVQSPALLIYDGHLSHISVDLVESAIENNIIILKLPPHTSHILQPLDVAVFKGIKNKWDVLLAEWCRHNYGKRLSKSEFADLIGQVWTDVNSQTIKNGFRKTGIYPLNKDVIPRTNFDQDKLDRYDSMKKAQDDENGSTNQNDIISQEPIIATPSTSQKNLSCSSDSRVSLFSQNMEIPQTVISPSKIFENILLSTVKQSPIADKKNKKKIKESVKTKTMSKNMEKNKNDKSKKIKTNKKEIKTDSTDSEEEVEVTSGESSAYEIESEDGEPSLVSPTVENIKKGSFILVKFKGGKRNASNYFYACIVQNIEEEFDDITVMALKCLDETKKILLLTKMTYLQLILNKFKAINEIFEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00766382; iTF_00766383; iTF_00766385; iTF_00768111; iTF_00766386; iTF_00768116; iTF_00768117;
- 90% Identity
- iTF_00766386;
- 80% Identity
- -