Hrub034969.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Harpalus rubripes
Gene Symbol
-
Assembly
GCA_963082715.1
Location
OY720454.1:28151216-28153762[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8.2e-10 5e-07 31.6 0.0 4 38 18 52 15 58 0.86

Sequence Information

Coding Sequence
ATGCCAAAAACTCCAGGAGGTTGCAATtacaaaaagaaatataatgaaaaagatTTAGAAAGCGCGGTAACTGCTATCCTGCATAATAATATGTCGCAGAAGAAGGCGGCTGAAATATTTAATGTTCCTAGAAGTACTATTCAATTTCGATTAAAATTAATAGACACCAAGAAGTACAACAAAATTCGACATGGCCCCCCAACAGTATTGACAGATGAAGAAGAATCTATCCTCGTTAAATGGATAACAACAAGCTGCAAAAAGGGCTTCCCTAGACGAAAAGATGATATACTTTCCGCCGTAAAAGACTTTCTAGACGAGACTCAGAGAACGAATCCTTTTAAGGATAATTACCCAGGGTATGGTTggtacaaattatttttgaagcGCCATCCGGAGCTTTCAGTGCGAACCTCTGAGGCAGTAACTAGTGCAAGTTCGGTAGTATCCGAAGCAGACATTAAAAAATGGTTTGAACAaattgaaacatatttaaaagataatgaatTATTTCATATTCTGGAAGAGCCCTCAAGAATATTCAATGGAGATGAGACTAATTTTCAACTGTGCCCTAAAAACGACCGGGTCATTGCTCCTAAGGGTGAAAGAAACGTGTATGAAGTGGATATTGGAGCAGCGAAATCAACACTAACAGTGATGTTCAGCTATAGCGCAAATGGTGAAGAAATTCCTCCCATGATCATATACCCTTACAAAAGAATACCAAAAGATATTGTGAATTCTGTTCCTAAAAATTGGGGCATAGGAATTAGCGATAATGGCTGGATGAAATCAGAATTGTTTTACGAGTACataggaaatatattttatccaCAGTTAATAAAAGCAGGTATTCCATTACCAGTAATACTATTCGTAGATGGACATAAAACTCACATGACTTTAAAGCTCACGCAATTGTGCAATAGATTAAACATTATACTTATAGCCTTATATCCCAATTCCACACGACTTCTTCAGCCAGCTGATGTTGCGGCTTTTAGACCGATCAAATATGCATGGAGGAAAGGTGTCCTagaatggcgaagaaaaaatcCTTCTGTAGCTCTGACTAAGGATAAATTTGCTCCAATTTTAAAATCAGTCCTTGAAAACTGCAATAATAAAACTGCTGTTCAAAATGGTTTTAAAGCTTGCGGGTTATTCCCCTGGAATCCAAATGCAATTGATTTCAGTAAGTGCTTAGGAAAAGGAAAAATACCAAGTATCGGCGacaaacaaaatatcaccagtGTCTTAAGCTATGAAGAATTCATTGGAATTGTTGGAGACGATAAAATTAAATCGTTTCAGAAAAGGTATGAGCAAAATAATTCCGAGGAATACAAAATGTTATACGACATATGGGAgacatttattcataaaaatgaaacaagtagcaatattttatccaaaaaaattgaagaaaataggAATGAAAATACAAGAACGCCTCAAGAAACAGATATTTCAgaagaatttaaacaaaattgctGTGAAATATTTGTAGGAACAAACGAAAACATGGAGAACAAAATTATAAGTCAATTGGAGACAACTAcagataatgaaaataaaatattgattgaTGGTCTTGCTTACGACATAAACGAAATCGACATTATTCCTGAAGAGGAATTTGTTGCTATGGCTCCAACTTATGAACATATTGTTCCTCATAACTCATCattaacagaaattttacaGTGGCCAGTTACTCCACAACGTAAAGgtgtaaaaaatacaaataaggaTCCATTTGTGTTAACATCAGAGCAATGGCAAGAAATCTATAGAAATAAAATAGACACGAAGAAGaaacaagaagaagaaaaagaattgagaaaaagaaaaagacTTGAAAAGAAAGACCTGAATAATAGTaacaagaaaaagaaaactactaaaaatgccatcaaaattaataataatcctAATCCTGCAAAAGCAGCtattaaacttataaaaacAACTGATTCACCAAGTGTGAATATGCAACCTACCTGTGATTATAAGACAATAAGTTCTAGTCCCGTAAAAGTAGACATATGcaatcaaaatacaaaaaaaacgGAAGAAAATGATATTACACAACAATTCTGTGATGATAATATTACTGCGCCGACCTCTAATAtgcaatatattaaaaatgtaccTGAAGAAAGTATAGATGGTACAGTTGATGTAGCTTTAAGtgcaaatacaaatattaagaCTGAAAATCTAGTTAAGAATTTTTCTATGAGTAAAGACTGCGTTAATAAACCTAAGGAAAATGTTAATAAGATAAATATCATATCATACGAGACAGTTAATATCGATCTGAAACAAATCGACTGCCTGAAGAAggtaaagaaaaatttatttaacgaaacTGAGACTATTTCTTTGAACTTACTATCAAAAGGAATGTGTCACACTTGTTTCCGCAGTATTACATCAAATAACTGTGGCATTAAATGCAGCTTGTGTACTAAACTTTTCCATCTAACATGCTGTTCTGATTTTCAAGAAAAAGAACAATTTGTTTGCAATAAACATTAA
Protein Sequence
MPKTPGGCNYKKKYNEKDLESAVTAILHNNMSQKKAAEIFNVPRSTIQFRLKLIDTKKYNKIRHGPPTVLTDEEESILVKWITTSCKKGFPRRKDDILSAVKDFLDETQRTNPFKDNYPGYGWYKLFLKRHPELSVRTSEAVTSASSVVSEADIKKWFEQIETYLKDNELFHILEEPSRIFNGDETNFQLCPKNDRVIAPKGERNVYEVDIGAAKSTLTVMFSYSANGEEIPPMIIYPYKRIPKDIVNSVPKNWGIGISDNGWMKSELFYEYIGNIFYPQLIKAGIPLPVILFVDGHKTHMTLKLTQLCNRLNIILIALYPNSTRLLQPADVAAFRPIKYAWRKGVLEWRRKNPSVALTKDKFAPILKSVLENCNNKTAVQNGFKACGLFPWNPNAIDFSKCLGKGKIPSIGDKQNITSVLSYEEFIGIVGDDKIKSFQKRYEQNNSEEYKMLYDIWETFIHKNETSSNILSKKIEENRNENTRTPQETDISEEFKQNCCEIFVGTNENMENKIISQLETTTDNENKILIDGLAYDINEIDIIPEEEFVAMAPTYEHIVPHNSSLTEILQWPVTPQRKGVKNTNKDPFVLTSEQWQEIYRNKIDTKKKQEEEKELRKRKRLEKKDLNNSNKKKKTTKNAIKINNNPNPAKAAIKLIKTTDSPSVNMQPTCDYKTISSSPVKVDICNQNTKKTEENDITQQFCDDNITAPTSNMQYIKNVPEESIDGTVDVALSANTNIKTENLVKNFSMSKDCVNKPKENVNKINIISYETVNIDLKQIDCLKKVKKNLFNETETISLNLLSKGMCHTCFRSITSNNCGIKCSLCTKLFHLTCCSDFQEKEQFVCNKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00766371; iTF_00766372;
90% Identity
iTF_00766371; iTF_00766372;
80% Identity
iTF_00766371; iTF_00766372;