Hrub000505.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- -
- Assembly
- GCA_963082715.1
- Location
- CAUJCB010000139.1:28983-30806[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.1e-11 3.1e-08 35.5 0.0 1 37 18 54 18 61 0.89
Sequence Information
- Coding Sequence
- ATGGTCAGAACTTATAAACGGCTGTTAGGAACGAGGGAGTATAAAAACTATACCAATGCAAATTTAGAAGAAGCTCTTGAGAAGATAGTAAATGGTGCCTTGACAATCAAACAAGCTGCtgtgaaatataaaataccgtatggtacattatttaataagtatCATGGAAAACATGCAAAAAATCCGGGTGCGCAACCAGTGCTCTCAAAAAATGAAGAGCAAGCCATTATTAAAGCTTGTCTTCAATGTGCAGATTGGGGATATCCATTCACTACGACAGATTTACGTACGGTTACAAAAAGCTACTTAGATAAGCGCggattgaaaacaaaatttccAAATAATTTACCAGGCGTAGAGTGGGCACGAAACATATTAAAAAGGAATAAAAATATAGCTGCACAAAGACTGGCAGCAAACATAAGCAAAAAACGTGCAGATTTAAGTGTTGccgaattaaaaaaatattttcaaaatttagaagtTACGCTAGAGGATGTCCCCCCcgaaaacatttttaattacgatGAGACGAACATGTCGGACGATCCAGGGAAGTTGAAGACTATATACCGACGTGGTACAAAGTATCCTGAAAGAGTGATGAATTATTCGAAATCGGCAACAACAGTTATGGTTTGTGCTTCAGCGTCTGGAGTGCTGTTACCGCCTTACATTGTATACAGAGCTGAACACTTATGGGATTCGTGGACGACTGACGGTCCAAAAGGAAAACCGTGCTGTGAAGATCGGTGCTGCAGTCACGGAAGTTCTTACAATAGAACTAGCCACGGGTGGATGGAATCCAACTGTTTTAATGATTGGTTTGTACAGGTATTTTTGCCACATGCGAAGAGGCTTCCAAATAAAAAAGTGATAATAGGTGATAATCTTGCTtctcattttaatttaaatgtaatatcATTGTGTCACGATAATGATATAAGTTTCGTTTGCCTACCACCAAATTCGACACATATTTGTCAGCCGCTTGATGTTTCATTCTTTCGTCCAATGAAAATTGCGTGGAAAAAGAATTTAACAGAATGGAAAGCTAGTCATCCTAGAGCAGCAAGTTTGCCGAAAGAGAGTTTTCCAAATGTATTAAaagaatgtataaataaaatggaTACCATCCCAAATCAAACCCATCATAAAATTGGTGATCAAGAAATATCTGCCATTAAGAGAAATATTATGAACGGATTTGAAGCTTGTGGAATATATCCTTTTAACGCTGAGAAAGTTATCGGCAGACTGCGAAAAGATCTTGGAGAAGTTGGTGAAATAGTGTCTGAAAGTTTAACAgaatttttgaagaaaacaagATTTGATAAACAGACACGTGTCAATAATCGcagaaaaaagttaaatgtagaACCTGGAAAGTCAGTAACCGGATATAACAATAGCAGTAGTAGTTCAGAATCAGCTAGCGCAGAGGATTCAGATAGCAATAGTTCCTCTTGTTCTATTTCTGAAGACGAAGTTCCTGTAAGTGCTGTTAAAGCTACGCAAAATGACGATACTGTTCAAGATATTGCAGTTAATTCGTACATTTTAGTGAAAGTtctatcagaaaaaaataagatGTACAAATACACAGCAATTgtaaaaaacattatttcgGATGAAGAATTAGAAACAGTGGGATTGAAATCTCTTGACACAGCAAATAAAGTATTTAAGCTACAAGAAGAGGACTGCTTTACAATTAAGAAATGTGATATCTTAAAGAAACTTCCCAACCCAGacataattcataaaaatactCGACGCCAAAGATATGTATTCCAAGACCCTGTACCtgtttttgaaaaatga
- Protein Sequence
- MVRTYKRLLGTREYKNYTNANLEEALEKIVNGALTIKQAAVKYKIPYGTLFNKYHGKHAKNPGAQPVLSKNEEQAIIKACLQCADWGYPFTTTDLRTVTKSYLDKRGLKTKFPNNLPGVEWARNILKRNKNIAAQRLAANISKKRADLSVAELKKYFQNLEVTLEDVPPENIFNYDETNMSDDPGKLKTIYRRGTKYPERVMNYSKSATTVMVCASASGVLLPPYIVYRAEHLWDSWTTDGPKGKPCCEDRCCSHGSSYNRTSHGWMESNCFNDWFVQVFLPHAKRLPNKKVIIGDNLASHFNLNVISLCHDNDISFVCLPPNSTHICQPLDVSFFRPMKIAWKKNLTEWKASHPRAASLPKESFPNVLKECINKMDTIPNQTHHKIGDQEISAIKRNIMNGFEACGIYPFNAEKVIGRLRKDLGEVGEIVSESLTEFLKKTRFDKQTRVNNRRKKLNVEPGKSVTGYNNSSSSSESASAEDSDSNSSSCSISEDEVPVSAVKATQNDDTVQDIAVNSYILVKVLSEKNKMYKYTAIVKNIISDEELETVGLKSLDTANKVFKLQEEDCFTIKKCDILKKLPNPDIIHKNTRRQRYVFQDPVPVFEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01104201; iTF_01104202; iTF_00766411; iTF_00766349; iTF_00766355;
- 90% Identity
- iTF_01104202; iTF_01104201; iTF_00766411; iTF_00766349; iTF_00766355;
- 80% Identity
- -