Hrub023319.2
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- lov
- Assembly
- GCA_963082715.1
- Location
- OY720451.1:47016382-47033332[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-17 1.2e-14 55.9 0.0 1 44 391 434 391 435 0.96
Sequence Information
- Coding Sequence
- ATGTCTCAGTCCCACTACTCTCTCCGGTGGAACAACCACCAGTCGCACATTCTCTCTGCCTTCGACGCCCTCCTGCAGGCGGAGACCCTGGTGGACGTGACGCTGGTTTGCGCCGAGACGAGCGTCAGAGCGCACAAGGTGGTGCTCTCGGCCTGCTCGCCCTTCTTCCAGAGGATCTTCTCCGAGAACCCCTGCAAGCACCCGGTCATAGTGCTCAAGGATTTCCATGGATGGGAGGTCCAAGCGATTGTGGATTTTATGTACAAAGGGGAAATTAGTGTGGGCCAGGAGCAGCTGCAGAGTTTGATCAAGGCGGCTGAAAGCCTCCAGGTGCGAGGTCTAGTTCACCAAGAACACCTCACCATGGATAAAGACTCGCTGCCCACACCCTCTACATCCCCCGCGGAGTACGACCGCTTTCGGTTCCCAGTGCCCGGTACCACGGTTCGAGCGGTTGGCGAACGCGTGAGCTCTTTTTCCCCTGGCCAGGCCTTCGAGCCCAGTGCAACACCTGGTGGACCCGCACCAGGGGTCAAACTACCCCACATGCAACACCCTACCTTCGCCGATAGGGAATGCAGTAGTCCCATTCCCAGGAGGAAGCAAGCCAGACCGAGGAGGAGGTCGGGCGAGTGCGGACCTCAGGACTTGTCCAAACCACCAAGCCCGGGGATGGAGCAAGAAGCCGAAAACCTGTGTATGAAAAAACCCCGCCCTTCACCCCCTCCATCAATGCACCCACCTCACTCCTTAAAGTCCGAACCAGAACGACTATCCTCCAGCCCCCCAGAGCTAGATCTCAGCATGCCCACCGGAGGACCTGGACAAGCTCACTCGGAGAAGGACTTCCACACAGGGAGTCCCCCGTTGTTACCTGCTCATCTACTACACCCCGAGCACCACCTCGATCACGGACACTCACATTCGCCCCTGCCGTTTCCGCCAATGCCAAGTGTGTCGGCGTTGGCGATGACCCCGCCGCATAGTAAGTTTTTCGGTCTGGATTCACCGTTGGGTCTTTTTCCGCCCGGACTGGACGGCTGCAGAAATCCTTTATTAGACATGACGGATCCAAGAACGACGCCAGACACACACATGTTCACCAAGAAGAAGATGGGGCGTCCAAAAGGCCAACACAGCGCACCTAGAGGAGGACCTCCGAGGTCCTGGACCAACGCCGAGTTAACCGAAGCCCTGCAACATGTTTGGAACAAGAAGATGACCACATCGCAGGCTTCACGTATCTTCGGCATCCCCTACAATTCCTTGCTGATGTATGTCAGAGGAAAATACGGGAAAAGCCTCAAACTGGAGCAGCTCAGGAAAGATTGTATCGGGGGACCTGGATTAGATCTATTAAATCTAGGAggcaacaacaacaataaccaGTCCAAATCCACCCCAAACGATGCCTCCGACCAACCCCGTCCGTCTGACGACCTCCCTCCCCCAGTTTTCAACCCCTTTACCAGTTTCTACCCAGATTTCGGGTCGGGGTTCCCTATCCCTGTGAGTATGATCCACCTGCTGCCACAAAGCGAGAAAAACCGCGAAGGGTTGCATCAATCCAACCCCGAGGATGACAAAATCAGAGTAAAGGAAGAGGTTGAACACGACCTGTTCAGACCGATAGCGACACCTAAGGACGAGAGGCGGGAACTAGTGCAACAGAATGGGCAAGATTAG
- Protein Sequence
- MSQSHYSLRWNNHQSHILSAFDALLQAETLVDVTLVCAETSVRAHKVVLSACSPFFQRIFSENPCKHPVIVLKDFHGWEVQAIVDFMYKGEISVGQEQLQSLIKAAESLQVRGLVHQEHLTMDKDSLPTPSTSPAEYDRFRFPVPGTTVRAVGERVSSFSPGQAFEPSATPGGPAPGVKLPHMQHPTFADRECSSPIPRRKQARPRRRSGECGPQDLSKPPSPGMEQEAENLCMKKPRPSPPPSMHPPHSLKSEPERLSSSPPELDLSMPTGGPGQAHSEKDFHTGSPPLLPAHLLHPEHHLDHGHSHSPLPFPPMPSVSALAMTPPHSKFFGLDSPLGLFPPGLDGCRNPLLDMTDPRTTPDTHMFTKKKMGRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCIGGPGLDLLNLGGNNNNNQSKSTPNDASDQPRPSDDLPPPVFNPFTSFYPDFGSGFPIPVSMIHLLPQSEKNREGLHQSNPEDDKIRVKEEVEHDLFRPIATPKDERRELVQQNGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00767333; iTF_01104871; iTF_01104176; iTF_00768915; iTF_00768026;
- 90% Identity
- iTF_00767333; iTF_01104871; iTF_01104176; iTF_00768915; iTF_00768026;
- 80% Identity
- iTF_00767333;