Hsub001681.1
Basic Information
- Insect
- Harpagoxenus sublaevis
- Gene Symbol
- -
- Assembly
- GCA_030770355.1
- Location
- JASTWR010000005.1:158090-160993[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00028 0.052 15.4 4.0 1 23 235 257 235 257 0.98 2 11 0.47 85 5.3 11.7 2 23 264 285 263 285 0.91 3 11 6.9e-05 0.013 17.3 6.6 1 23 291 313 291 313 0.99 4 11 0.00084 0.15 13.9 1.6 1 23 319 341 319 341 0.95 5 11 1e-06 0.00019 23.1 1.8 1 23 347 369 347 369 0.97 6 11 3.1e-05 0.0057 18.4 1.1 1 23 375 397 375 397 0.97 7 11 9.1e-05 0.017 17.0 1.6 1 23 402 424 402 424 0.97 8 11 2.7e-05 0.005 18.6 0.0 1 23 430 452 430 452 0.96 9 11 0.00011 0.02 16.7 0.1 2 23 464 485 463 485 0.96 10 11 1e-06 0.00019 23.1 2.0 1 23 551 573 551 573 0.98 11 11 3e-05 0.0054 18.5 4.6 1 23 583 605 583 605 0.97
Sequence Information
- Coding Sequence
- ATGTGTACCACTCCTGGGAATGCTGGTACAGGATTCGGGTATGCTTGGTCCTTCGGGCCGGGGACAGAGACCCGGGAAAACGCCCAGAGCGAACTCGCGACAAACATCAGTTACGCCGTCAACAATAACCAAGATCAAGGATCCAGTCAGAAGATACAAGTCGATATCAAGCCGAGCAAGGCCGCTATTACCGCTACCACTCATCGTCGTCCAATGTTTGCGATGAACGAAAGTTGTCAGCAAACACCTACTACGCATCATGGCCATACGGGCGGAGGTGGAGCACATAATCAAACGACCCATGGCACTCACGTTCGCGCTAAAAAGCATCACGACGTATTTTCATTAACGTGTGACAAAGGAGGATGTAATTGCGATGCGGCTCATCCTACACCTCCGCCTTCCTTGTTCTCAAACACCTTAGTTTTTACAACAGCCGACAAGCACGCCATGAGTAAGCACTTCATGACGCCGATCGGACCGTTGCAGCTTACGGCGGAAGAGTGCAATGAGATCTTAATGAAGAGAGCAGCTGCTGCATCCAATCAAGCTAATGCGACGAATAACGTTGCGACGAGTCAGACCGACAATACCGCTCACTTTGGACATGTTTTGACCCATGTGAATACAACGCAAATCGAGACTAAAGTCAAACAGCAACAGGATATGGGAAGTCAGGTCCGTGTACCGAAAGAACGACCATATTCTTGTACGGAATGTGGGAAATCCTTTCTTCTTAAGCATCATCTTACGACACATGCGAGAGTACACACTGGCGAACGGCCACACATTTGCATTCATTGCGGCAAGAGTTTTGCGCACAAACATTGTCTTCATACGCATCTACTCCTGCACAGCGCCGAGAGACCGTATCAATGTCGCGAATGTAAAAAATCTTTTACACTGAAACATCATCTTGTAACACATACCCGCGTGCATACGCGGGAGCGGCCGTTTATCTGTCAAGAATGCGGAAGAGCATTTCCTCTAAAACGTCATTTAGTGACGCACAGTAAGTTCCACTCAGGGGAGAGACCTTACGTTTGCGAAGAATGCGGGGAGTCGTTTTCACAAAAAGATCATCTTACGATGCATTCACGCTTCCATGGCAGCCTACATCCATTCGTTTGCCACGATTGTGGTGCAACTTTTCAAAGGAAGTTTGAGCTAGTTAATCACGGCCGGCTACATGGCAGAGTACCACACTCGTGTACCGTATGCGGAAAGGAATTTCTGCAAAAGCGAACACTTTTGGCTCATATGCGTTTACATACAGGCGAGACACCCTTCGCTTGTACCGTTTGCGGAGAAGCATTCCCTCGGAAAGCAGACCTGGTCGCTCATTCTAAGATTCACAACAATAATGCAAATACTGATGAAAAGTCCCTTACATGCAGaGAATGTGGATTGGACTTCCCGAATCGTGAAGCTCTAAATTTGCATCAGAGGTTACATACTGGTGATCGAACACTTGTAACGGACCTTTGTGGATTAGCAGCCGCCTTTCAGCAAACCCCAGCACATTTTCTTACCCCAAACACTCCAGGAGCACATCAGatgaACGGACCGATAGGAACGCCTGGTGTCAGTCATATGCATGGCGCGACGCAAACATCGCCGCCAGTGGGTTCAGGACCAAAACCTAAGCCACACGTGTGTCCTGATTGCGGCCGCGGTTTCGCACAAAAACATGGCTTGTCGCAGCATCAACGACGTCACACAGATGGCAGTTGCCACATAAGATCACACGTATGCGACAAATGCGGCAAAGCCTTCTTCCAGAAGAATCATTTGTTATTACATCAACGTCAGCATATGGATCCGCCACCAAGTATACTTAGACAACAACAGAGACAAGCTGCCCAAGCTGCTGCGGCTCAGCAAgcacaacaacagcaacagcagcagcagcaagcgcagcaacaacagcagcagcaagttcagcagcagcagcaagtGCAACAACAAGTACAGCAGCAAccacagcaacagcagcaaacGTGTACCGTCGATACGAAAACGATTCAACTACAGGCAATACAACAGCAGGTACAGCAACAAGTGCAACAACAGgtgcagcagcaacagcagcagcagcagcagcagcagcagcaacaacaacagcaacagcagcagcaacaacagccgCAGCAACAAGCATGTTCCGTGGACGCTAAAGCAATACAGTTGAATGTCACCATGTGA
- Protein Sequence
- MCTTPGNAGTGFGYAWSFGPGTETRENAQSELATNISYAVNNNQDQGSSQKIQVDIKPSKAAITATTHRRPMFAMNESCQQTPTTHHGHTGGGGAHNQTTHGTHVRAKKHHDVFSLTCDKGGCNCDAAHPTPPPSLFSNTLVFTTADKHAMSKHFMTPIGPLQLTAEECNEILMKRAAAASNQANATNNVATSQTDNTAHFGHVLTHVNTTQIETKVKQQQDMGSQVRVPKERPYSCTECGKSFLLKHHLTTHARVHTGERPHICIHCGKSFAHKHCLHTHLLLHSAERPYQCRECKKSFTLKHHLVTHTRVHTRERPFICQECGRAFPLKRHLVTHSKFHSGERPYVCEECGESFSQKDHLTMHSRFHGSLHPFVCHDCGATFQRKFELVNHGRLHGRVPHSCTVCGKEFLQKRTLLAHMRLHTGETPFACTVCGEAFPRKADLVAHSKIHNNNANTDEKSLTCRECGLDFPNREALNLHQRLHTGDRTLVTDLCGLAAAFQQTPAHFLTPNTPGAHQMNGPIGTPGVSHMHGATQTSPPVGSGPKPKPHVCPDCGRGFAQKHGLSQHQRRHTDGSCHIRSHVCDKCGKAFFQKNHLLLHQRQHMDPPPSILRQQQRQAAQAAAAQQAQQQQQQQQQAQQQQQQQVQQQQQVQQQVQQQPQQQQQTCTVDTKTIQLQAIQQQVQQQVQQQVQQQQQQQQQQQQQQQQQQQQQQQPQQQACSVDAKAIQLNVTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00899020;
- 90% Identity
- iTF_00684308;
- 80% Identity
- -