Hsub029353.1
Basic Information
- Insect
- Harpagoxenus sublaevis
- Gene Symbol
- -
- Assembly
- GCA_030770355.1
- Location
- JASTWR010000577.1:67308-67809[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.5e-09 9.5e-06 26.6 0.0 2 35 14 47 13 55 0.88 2 2 6.4 6.4e+03 -1.7 0.0 13 19 65 72 59 75 0.59
Sequence Information
- Coding Sequence
- atggtacgcacgtatcgtcgcaaaacgactcccgtcgacaaggagcaactgaagaatgcagttgtggcggtgaaaaaaaataaaatgagcgcttatgCAGCCGCAAAACGGTTCGGTGTCCcgagaaccacgttgaacgaCTGGCTAAAGAAGAACCAGGATAAAATAGAACACGTGGATGACGTGGTCGTACGATATAAAGGAGGCTTATCGgttatgaacgcgGAAACTGAAAAAACCTTGGTGGAATACTTAGTACATTGCAACGATATGCACTTTGGGCTATCTGCGAAGGAAACCCGTGGTTTAGCCTTTGATTTAGCCAAAAAATTAAATCTGAAGGTACCAGCATCGTGGGAAACCGCTCGCATGGCCGGTAAAGATTGGCTAAGCAgctttctaattattttttaa
- Protein Sequence
- MVRTYRRKTTPVDKEQLKNAVVAVKKNKMSAYAAAKRFGVPRTTLNDWLKKNQDKIEHVDDVVVRYKGGLSVMNAETEKTLVEYLVHCNDMHFGLSAKETRGLAFDLAKKLNLKVPASWETARMAGKDWLSSFLIIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01409008;
- 90% Identity
- -
- 80% Identity
- -