Haxy000465.1
Basic Information
- Insect
- Harmonia axyridis
- Gene Symbol
- -
- Assembly
- None
- Location
- chr3:9452207-9460495[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.6 1.4e+02 3.7 0.1 3 23 290 311 288 311 0.90 2 15 0.81 72 4.6 0.0 2 21 391 410 390 411 0.92 3 15 0.00058 0.052 14.5 4.6 1 23 509 532 509 532 0.96 4 15 0.017 1.5 9.9 1.8 2 23 539 561 538 561 0.93 5 15 0.00018 0.016 16.1 2.1 1 21 657 677 657 678 0.95 6 15 0.019 1.7 9.7 0.9 2 23 690 712 689 712 0.91 7 15 0.66 59 4.9 2.5 1 23 715 738 715 738 0.96 8 15 0.0015 0.13 13.2 0.2 3 23 745 765 743 765 0.95 9 15 0.067 5.9 8.0 0.2 1 23 769 792 769 792 0.97 10 15 1.4 1.3e+02 3.9 0.4 2 23 799 821 798 821 0.92 11 15 0.12 11 7.3 0.9 2 23 830 852 829 852 0.94 12 15 0.46 41 5.4 1.2 2 19 858 875 857 880 0.89 13 15 5.9 5.3e+02 1.9 2.6 3 23 1015 1036 1014 1036 0.95 14 15 3.1 2.8e+02 2.8 0.2 2 23 1043 1065 1042 1065 0.92 15 15 0.41 37 5.6 0.9 1 23 1078 1100 1078 1100 0.96
Sequence Information
- Coding Sequence
- ATGAATAGGAAAAATGGAGACCAAATTATGCAGAATATGTGGGCGACTAGGTACAACCCATCAAGATATATTCAAATTAGAAGGTTTGATACACAAAATAGAAACTTGCCTTCCAATATTTGTAAGTTCAAATCTTTGTTTTTGAATACTATATGCGACGAATGCTTGGAAAATATCACAAAGTTCTATCATTTCATCAAAAACTGCCTACAAAATATCATAATTTTGGAATCTCAGTACGATGTCACAGAATCTTGCTTAAAGTCAAGAAGAAAGCATGACAAAAGTTGTCTGGTGAATATTTCTGAACATACTAAAGCTAAAGAAACTCAAACTGATGATACATACGATATATTATTTACAAAATATGAAGAAAATTCAAAAAATGTTAAGTTACCAATTCAAGGTTGTGATAAAAATTTAGTTGCTTATGAGGTTGATTCTGATAATTCAGAACCTGAAAATGATTCGCCCAATAAAGGAGTTGTTCTTGTAAATAGGAGAAATAATAAGAAAATTGATGATTTACTAAGTGATCTCTTAAATAAGACACCTTTCACTAAACAGTATTTCGATAACTTTGAAAATAATATTATAAATGAAATAACCCACAGAAGGGCAGTAAAAAGAAAGTTAGAAACGATTGAGAATGATCCAATGAAAATTTTTAAAGTTGACAGTGGAAATCGCAGGAAAAATAAAGTACCAAAAAAATTTCCCAGCAATATTAGTTTCCAAAATAATGGCATTTCTGACTTTGTACAAGAATTAAATCAAGCTGAAATCAATGACAAAAAAATTGGAAATCACCTAGAAATTGCTAGCTCCCAGAGTATTACGACACTAGATCCAATACTACCCCAAAATTGCCTTTTATGTGATGAAAAATTATGTGGACCTGCAGAACTAGCAACACACATTTTCGAAATACACAATTTGGATCTCAATAAAACAATGGAAAATTTCTCTGATAAAAAGAAAAAGATTCCTAATCTTTTGAAAATATCAGATATCAAGAGGAATAGCAGTTCTGATGACAATCCATATGATTCAAGTTCTCCCCAAAATCATCAAGCTGACTTCTCCTGCCATATTTGTACCTATTCGTCTTTGACCAAAAAAGATTTATACCATCATTGTCAATCAGAACATTCTGCAGAAGTTCCACTTATGTGTGGGATATGTTTCCAACCCATGACATCTCTCGTAAATTTAAGAAACCATCTAAAGATCTGTGCTATCGAGTATCCTGTAAAAACAAGGTATTTCTGCACTATATGTAAGTATGGTGAGGATGGAATGAGAGAAATGGAAAATCATGTTTTGATACATGAATTTCTAAAGGACAGATGCAACAAGGAGGTGAGGATGTTTGATCCGGCAGATTATGTTGAGCTTAATTATTCTTGTGAATTTGGACCCGTTTCCCCATCATCTAAAAACCTAAGCTGCAGCTTATGTTTTCAGTCAAACTTCCAATCATTTGAAGACTTCAGCAACCATAGACGCAAGCAACACAGTAAATTCCATTGCGACTTATGCAACAAATTTTATGGAAGAAACTCTCACCTCTGGAAACATGTTAATCGACTGCACAAAAACCATCCAAGCATCACCTGTCAAATTTGCCAAAAAACCAGTGCTTCAAAATACCATTTGGGACAACATTTCTCCAAAATTCATTCTTCTAAACACACAAAAAACACTAACGATATGCTTAACACTGATGACATGAATTTTGAATTGGGGAATGATCATTCTGTGTTCGGAAAGTACGATTTTATGAAAAGAGAAAAGAAAAGTACTTCTTCAGAATTCGATGATATCTCAAATAATGCAGCCTCAGATCAAGATATGTTGGATGAGGTTTTCGCAACAAATGTCCCAGTTCCTAAAGAGGTTGATGCTTCTAGTCATCTGTACACAAATATTATAACAAATTATACACCTCCTCCAAATGGGGGAGATTTCAAATGTCCGAAATGTTCTAAGGGATTCTCTAAGAAAATATTACTGAAGAAACACAAAAAAAACTGTAGGCCTAAGCTGCAAAAAGACCTTCTGACCCGTTGCAAATCCTGCGCTAGGATATTCAAAGACAGACAAAGTCTGGCAAAACATCTGGTCAATTACCACTCTGAATATACTTGTGAAATTTGCTCACAAAAAACTCAGAGTAAATGTGAGATAGTGTCTCACATAAGATTCACTCACCCTAAATGTAAGCTCTTCTGTAAGATCTGCGGAACCATTTTACGTTCCCAGCAAAATCTAGTAGATCACATTAATGATCACTCGAATTCTTACGTTTGTCAATTTTGTGGAGACTCTTTACCTTCCAAAATTAAACTGAAAATGCATATTTTAAGTCTACATAGGAAAATCTTGAGTTTAAGCTGTGGTATTTGTTTGAAGTTGTTCGAAAACCAACACATCCTGAAAGACCACGTTCAGTTAGTACATAAAAATGATCTCAGACCTTTGACCTCTTGTACTGTATGCGGTAAAAACTATGGCTCAAAATGGAAAACCTATGACCATTTGAATAAGTCTCACGGCCGCATATTCAAAGTTTGCAAAACCTGTTTGGAGGTATTTAATTCGGAAGAGGAGTTGAACTTGCATTGTAAAGAAATGCATTCTTTGAATAATCAAAATATATCCAGCATCAAACAAAGCACTTATGTGAAGCAAGAAGCAGAAGAGATTGACGAATCGGAAAGTTGCAAAGAAGAAATGGAAGGAGTGGAAGAAATTGATCAGCCCAGTGATGAAACGTTCAATAATTTCACCCCAGACATATCTGCAGTAAAGATATCAATGCTAGAAAAGAGGTTGATGGGTAAAAAAATAGAAAAAGAAGACACTTGCCCAAAATTGGAAGAAAACAAAACCAGTGAAGAACAACCTAAGTTCCTTTCAATAAAATCAAAACTTGCGACAACAAAGAAATCAGCAAATTCGCCTAGATATGAATATGACGTTGCTCAACAAAGCAGTTCAAAGAGAACGGTTTATGTCAATAGTGATGTTCCATCGCTTTGTGAGATTTGTTTCAAAACATGGCCGGCGAAAAAGCATCTTTGGCAACATTATATTCGTTGTCACAAAAGCGTTGCTGCTACAGTTTGTGGTATTTGTTTGAAAACCAACGTGGACTATGTAACTTTACAGGAACATCTTAAACAGAACCATCCCACCTTGCTTCATGGACAAGGTTTTGGCTCGAACTTTATATGTAGAGTTTGCGGAAGATACCATAATGCAAGCTCCAAGTTGAAATTACACATGGCAATACATGAAAATTTCAATTGGTCTATATTAGAAACTACAAATGATGGTGAAAAGATGTTACAAAGAACTGAAGATAACGAAACATACTTTGAGAGCTTGATAGAACAAGTAGAGTGTTCTTCGAACGAAGATGAAGAAACAGAAGATGAGCATAAAGTAGAAAAAGAGGGTAATGATGATTCAAGTAGTTCAGAAATAAATGATAGTGACAGCGATTCTATCTCTGAAGATTCGAACAGGAATCAAAACGATACTAAACAACACTATCGAAACAATTCCTCTGAAAACTATGGAGAAGGAGATATGATAAATAAAAATAATGAATGTTCTCAGGTTACAACGGAATTCCAAAGTACTGAAAGTGACAATTCAAGTTCTGAAAGTTGCAGCAGTGAAGATGAAGATACAGTTGGAGGAAATGAGGAGAGATCTAATACTACATCCTCTAATGAAGTCCTAATAGTTAACGGTTTTACTAATTCTAGTAGTAATGCAATTGTAGTGAATTCCATGGGTGATTCTTTACCATTTGATGATAGTGGTTTGTTAGGTTTTAAAACAGAAGAGTTAGATTCGGCGGTGAAAAGTATCAGTCTAGAGTGTGGGACACAGGTTAAAGAAGATTCGGATATAGAATATTGTGAATTATCGATGGGCACTGCTTTGAATGATGGAGAAATTGAGTCTGCTGTAGGAAGCATATTGTGA
- Protein Sequence
- MNRKNGDQIMQNMWATRYNPSRYIQIRRFDTQNRNLPSNICKFKSLFLNTICDECLENITKFYHFIKNCLQNIIILESQYDVTESCLKSRRKHDKSCLVNISEHTKAKETQTDDTYDILFTKYEENSKNVKLPIQGCDKNLVAYEVDSDNSEPENDSPNKGVVLVNRRNNKKIDDLLSDLLNKTPFTKQYFDNFENNIINEITHRRAVKRKLETIENDPMKIFKVDSGNRRKNKVPKKFPSNISFQNNGISDFVQELNQAEINDKKIGNHLEIASSQSITTLDPILPQNCLLCDEKLCGPAELATHIFEIHNLDLNKTMENFSDKKKKIPNLLKISDIKRNSSSDDNPYDSSSPQNHQADFSCHICTYSSLTKKDLYHHCQSEHSAEVPLMCGICFQPMTSLVNLRNHLKICAIEYPVKTRYFCTICKYGEDGMREMENHVLIHEFLKDRCNKEVRMFDPADYVELNYSCEFGPVSPSSKNLSCSLCFQSNFQSFEDFSNHRRKQHSKFHCDLCNKFYGRNSHLWKHVNRLHKNHPSITCQICQKTSASKYHLGQHFSKIHSSKHTKNTNDMLNTDDMNFELGNDHSVFGKYDFMKREKKSTSSEFDDISNNAASDQDMLDEVFATNVPVPKEVDASSHLYTNIITNYTPPPNGGDFKCPKCSKGFSKKILLKKHKKNCRPKLQKDLLTRCKSCARIFKDRQSLAKHLVNYHSEYTCEICSQKTQSKCEIVSHIRFTHPKCKLFCKICGTILRSQQNLVDHINDHSNSYVCQFCGDSLPSKIKLKMHILSLHRKILSLSCGICLKLFENQHILKDHVQLVHKNDLRPLTSCTVCGKNYGSKWKTYDHLNKSHGRIFKVCKTCLEVFNSEEELNLHCKEMHSLNNQNISSIKQSTYVKQEAEEIDESESCKEEMEGVEEIDQPSDETFNNFTPDISAVKISMLEKRLMGKKIEKEDTCPKLEENKTSEEQPKFLSIKSKLATTKKSANSPRYEYDVAQQSSSKRTVYVNSDVPSLCEICFKTWPAKKHLWQHYIRCHKSVAATVCGICLKTNVDYVTLQEHLKQNHPTLLHGQGFGSNFICRVCGRYHNASSKLKLHMAIHENFNWSILETTNDGEKMLQRTEDNETYFESLIEQVECSSNEDEETEDEHKVEKEGNDDSSSSEINDSDSDSISEDSNRNQNDTKQHYRNNSSENYGEGDMINKNNECSQVTTEFQSTESDNSSSESCSSEDEDTVGGNEERSNTTSSNEVLIVNGFTNSSSNAIVVNSMGDSLPFDDSGLLGFKTEELDSAVKSISLECGTQVKEDSDIEYCELSMGTALNDGEIESAVGSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -