Haxy009950.1
Basic Information
- Insect
- Harmonia axyridis
- Gene Symbol
- Acad9
- Assembly
- None
- Location
- chr1:58351792-58361186[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0016 0.14 13.2 1.4 1 23 676 699 676 699 0.96 2 13 0.0061 0.55 11.3 3.0 1 23 705 728 705 728 0.96 3 13 0.027 2.4 9.3 3.0 1 23 734 757 734 757 0.96 4 13 0.069 6.1 8.0 7.4 1 23 763 786 763 786 0.92 5 13 0.0061 0.55 11.3 3.0 1 23 792 815 792 815 0.96 6 13 0.03 2.7 9.1 2.6 1 23 821 844 821 844 0.96 7 13 0.069 6.1 8.0 7.4 1 23 850 873 850 873 0.92 8 13 0.031 2.8 9.1 6.5 1 23 904 927 904 927 0.92 9 13 0.0077 0.69 11.0 2.1 1 23 933 956 933 956 0.93 10 13 0.0062 0.55 11.3 3.0 1 23 962 985 962 985 0.96 11 13 0.0099 0.88 10.7 2.1 1 23 991 1014 991 1014 0.96 12 13 0.03 2.7 9.1 4.1 1 23 1020 1043 1020 1043 0.96 13 13 0.033 2.9 9.0 2.7 1 23 1049 1072 1049 1072 0.95
Sequence Information
- Coding Sequence
- ATGTATCAATTTTGCTTCACATCTAGAATAATAAATACCAGAGTTTTGAATGTTTCATTTAGGAAATTGTCAACTGTTTCTGTTGGAAAAGTGGCAGAAAAATATTCAATCAATGGCAATAATGCTGATCTAGAGAGCCTTTCCACAATCGTAACCAAAAATAGAGTTAAGCAGCCTCAAAGAGAACCTTTCGTGAAAAATTTATTTTTAGGTAAACTTGACACAGAAATCCTTGCATATCCTGAATTGAACAAAAATGACGTTGATCAATTAGAAGATATTATCAGTTTGTTACAAAAGTTCTCAAATCATCAAGATGATCCGAAAGATTTTAAAGAAGCGTTATGCAAACTAAAAATGAGAAGATGTTTAGGATTACAATGTTCTCTAGATATTGGTGGAAGAGAATTGAATCAAAGTGAAAAATGTCGTTTCAATGAAATATTACTGAACAGTAGTTATAGATATAATATTTTGAATAATGAGTTAGGTATAGATCTTTTATCTAAGTTTGGAACAGATGAACAAAAAACTAAATATTTAGAGAAATTAATCAATGGAGAAATATCCTCAACTATGAGTATAGCCCATAATTCTATTGGGTCTGATGAAATTACATCCGATATTGCTAGAGCTCATATTACAGAATCTTTTGATTCATATGTTTTGAAGGGAAAGAAGAAATATGTTATTAATGGAGACACTGCAGATATATTTATAATCTTCATGAAAACTGGAGGTACCGACAGGAAATTCCTTGAAGGAAATGAATTTTCAGCTTTTATTATAGATAAATCTATGCCTGGAGTTATTCTTGAGAAAATTGATGTGAATAATGCAAATTTAAAAGGAACATGCAATATAATTTTCAAGGATGTATTAATACCTAAAGAAAATATACTAGGTGCTGATGGAATGGGTGTAGATTTATTATCAAAAGTTCTACCTGAATATCACCTCAATATGAGTATCATAAATCTCAATATTATGAAGAAACTAGTTAATTCTCTTTCACAGGATTTACTGAACAATTCAGCTCCAGGTGAAGAAGTATACCAAACAGAAGCTGTGACTTCAATAGTAAGTGAAATTCTGTCTTATGTTTATATGGTAGAAAGTATGATATATTTAACATCTGGACTTATGAGCACTTATGAAAATCAGGATTGTGAAATTGAATCTTTAGTCACCAGTATATTTTCAACAGAGTTAGCTGTAAAGTCAACTGTACTAGGTATGAGTTTAGTTGGTACACCCTTCATTAATTCTGGACATTTTTGTCAAAAATTGCATGAGGAAGCAATAATACAATATACTTCTTATGAAAATGAAAATATGACAAAACTTTTGATTGGATTATTAGGGATACAATATTCAGGTAAAAACCTAGGAGAAACTGTAAAAAAACTAAGAAATCCTATGATGTTTGGAAACTTTATTCTAAAGAGGTTATGGCACTTTAGAAAACAAAGTTCAGACAATCCAAAATTGACTTTAGAATTGAAAAATTATCTCCATCCATCATGTCAAGAATCTGCAAATGAGATTGAATATTGTGTGCTTAGATTACAGTATGCTACTGAATCCCTTCTTGGCCAATATGGAATAGAAGTTTTAAATTGCCATAATCATTTGAGGAGATTGTCGGAATCTGTGATGCACATATATGCAATGATTTCTTCTTTAAGTAGAGCTTCTCGATCCTATTGCATTGGTTTAGAAAATAGTGATGCAGAAATGATATTAGCAAATGTAGTTTGCCGAAATTCTCACAAACATGACACAACTGATTGGGGGCATATTGATGAAAAGACTGAATTCATGGAAATTGTTCAGCATTACACTGATGAGAATGGAATGAGATCGTCTATTAAATATGAAAAAGGGGAGTTTGCTTTAAATCAGAAAAACAATCTCGAAGGGCATATACATGCTGTCCATTTGAATGAAAGAGATGATTATGCAGCCAACCATAAAGTTCAACTCAAAATTCATATCGATTCTGTCCATTTGAATAAACAAGAACATAAATGTTACTTATGTGATTATGCAGCCAATCAGAAGAATAACCTCAAAAAGCATATAGATTCTGTCCATTTGAATAAAAAAGAACATAAATGTCACTTATGTGAGTTTGCAGCCAATCAGAAGAATAACCTCAAAAAGCATATAGATTCTGTCCATTTGAATAAAAAAGAACATAAATGTCACTTATGTGAGTTTGCAGCCAATCAGAAGAAAAGCCTCAAACAGCATATAGATTCTGTCCATTTGAATAAAAGAGAACATAAATGTCACTTTTGTGATTATGCAGCTAACCATAAACATGACCTCAAAAAGCATATAGATTTTGTCCATTTGAATAAAAAAGAACATAAATGTCACTTATGTGAGTTTGCAGCCAATCAGAAGAATAACCTCAAAAAGCATATAGATTCTGTCCATTTGAATAAAAAAGAACATAAATGTCACTTATGTGAGTTTGCAGCCAATCAGAAGAATAGCCTCAAACAGCATATAGATTCTGTCCATTTGAATAAAAGAGAACATAAATGTCACTTTTGTGATTATGCAGCTAACCATAAACATGACCTCAAAAAGCATATAGATTTTGTCCATTTGAATAAAAAAGAACATAAATGTCACTTATCCAATCAGAAGAATAGCCTCAAACAGCATATAGATTCTGTCCATTTGAATAAAAGAGAACATAAATGTCACTTATGTGATTATGCAGCCAACCATAAACATGACCTCAAAAAGCATATAGATTTTGTCCATTTGAATAAAAAAGAACATAAATGTCACTTATGTGAGTTTGCAGCCAATCAGAAGAATAACCTCAAAAAGCATATAGATGCTGTCCATTTGAATAAAAAAGAACATAAATGTCACTTATGTGAGTTTGCAGCCAATCAGAAGAATAACCTCAAAAAGCATATAGATTCTATCCATTTGAATAAAAAAGAACATAAATGTCACTTATGTGAGTTTGCAGCCAATCAGAAGGATAGCCTCAAACAGCATATAGATTCTATCCATTTGAATAAAAAAGAACATAAATGTCACTTATGTGATTATGCAGCCAACCAGAAACATGTCCTCAAAAAGCATATAGATTCTGTCCATTTGAATAAAAAAAGACATAGATGTCACTTATGTGAGTTTGCAGCCTATCAGAAGAATGACCTCAAAAAGCATATAGATTCTGTCCATTTGAATAAAAAAAGAACATAA
- Protein Sequence
- MYQFCFTSRIINTRVLNVSFRKLSTVSVGKVAEKYSINGNNADLESLSTIVTKNRVKQPQREPFVKNLFLGKLDTEILAYPELNKNDVDQLEDIISLLQKFSNHQDDPKDFKEALCKLKMRRCLGLQCSLDIGGRELNQSEKCRFNEILLNSSYRYNILNNELGIDLLSKFGTDEQKTKYLEKLINGEISSTMSIAHNSIGSDEITSDIARAHITESFDSYVLKGKKKYVINGDTADIFIIFMKTGGTDRKFLEGNEFSAFIIDKSMPGVILEKIDVNNANLKGTCNIIFKDVLIPKENILGADGMGVDLLSKVLPEYHLNMSIINLNIMKKLVNSLSQDLLNNSAPGEEVYQTEAVTSIVSEILSYVYMVESMIYLTSGLMSTYENQDCEIESLVTSIFSTELAVKSTVLGMSLVGTPFINSGHFCQKLHEEAIIQYTSYENENMTKLLIGLLGIQYSGKNLGETVKKLRNPMMFGNFILKRLWHFRKQSSDNPKLTLELKNYLHPSCQESANEIEYCVLRLQYATESLLGQYGIEVLNCHNHLRRLSESVMHIYAMISSLSRASRSYCIGLENSDAEMILANVVCRNSHKHDTTDWGHIDEKTEFMEIVQHYTDENGMRSSIKYEKGEFALNQKNNLEGHIHAVHLNERDDYAANHKVQLKIHIDSVHLNKQEHKCYLCDYAANQKNNLKKHIDSVHLNKKEHKCHLCEFAANQKNNLKKHIDSVHLNKKEHKCHLCEFAANQKKSLKQHIDSVHLNKREHKCHFCDYAANHKHDLKKHIDFVHLNKKEHKCHLCEFAANQKNNLKKHIDSVHLNKKEHKCHLCEFAANQKNSLKQHIDSVHLNKREHKCHFCDYAANHKHDLKKHIDFVHLNKKEHKCHLSNQKNSLKQHIDSVHLNKREHKCHLCDYAANHKHDLKKHIDFVHLNKKEHKCHLCEFAANQKNNLKKHIDAVHLNKKEHKCHLCEFAANQKNNLKKHIDSIHLNKKEHKCHLCEFAANQKDSLKQHIDSIHLNKKEHKCHLCDYAANQKHVLKKHIDSVHLNKKRHRCHLCEFAAYQKNDLKKHIDSVHLNKKRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -