Haxy010888.1
Basic Information
- Insect
- Harmonia axyridis
- Gene Symbol
- -
- Assembly
- None
- Location
- chr2:4219541-4222406[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.072 6.4 7.9 0.3 2 22 117 137 116 140 0.89 2 10 0.00041 0.036 15.0 0.3 1 23 146 168 146 168 0.98 3 10 0.013 1.2 10.3 0.1 2 23 176 196 175 196 0.95 4 10 5.4e-05 0.0048 17.8 1.6 1 23 201 224 201 224 0.95 5 10 0.0049 0.44 11.6 1.7 3 23 235 255 234 255 0.98 6 10 0.0097 0.87 10.7 3.6 1 23 265 288 265 288 0.94 7 10 8.1 7.2e+02 1.5 1.1 2 8 341 347 341 352 0.86 8 10 9.8e-06 0.00087 20.1 4.3 1 23 367 389 367 389 0.97 9 10 2.9e-05 0.0026 18.6 3.3 1 23 395 417 395 417 0.98 10 10 4.1e-06 0.00036 21.3 0.8 1 22 423 444 423 447 0.91
Sequence Information
- Coding Sequence
- ATGTATCAAGTGTTTGGAAATAAGAATGGATCAGAGAAGATCAGCAATTCTCCAGTTCAAATAAAACCTAACATTAACGAGAGTAAAACTAATGGGATCACTTTTTTTGAAGGAGAGAAAAAAAGGGTTCTTGTAGAATTAAATTCAAAATATGGAAACTTTGTAGATGCGAAGGAAGTTTCAGAAGAAGCATTAATTGAAGATGTTCAAAGCTCTCGGGATATTGACTTAGAAAACATTTTCCTTGATCAAGATACATCAGATGAAGAAGGTACAAATGGCAAAAAAAAATTCTGTAATCAAAGTAGGATTGAAGTGGACCCACATCTGAGATCAGATTTGGATCTTCAGTGCTTTCAGTGTTTGGTAGTTTTTTCATCTAGAATAGATATGGAAAAGCACTATGAATCTACAGGTCATACTATGGCACCAAATTATAAATGCAGTATCTGTTCCAAAGCTATAAGTAAGAGAAAAGCTTATTGGGATCATATGGCAATGCATCGACATCTAAAGAAAAAATCAGTTTGTGAAATTTGCGGAGCAGTAGTTGTTTCTTTACACTTAAAACGGCATATGCTAGTTCATCAAGAAAAATCCCACATATGTCAATATTGTGGAAAAGGTTACGCCCAAAAAAATACCCTTACAGACCATGTTAATCGTAAACACAAAGGTGAAAAAAAGGATATGAACACACTTTGCTTCGTATGCGGAAAATTATGCAATGATTTGAAAGGCTTGACTTCGCATTTGAATACTCACACTGACGAGAAATGGAAAAAGCTTCCTCATCACTGTGAAGAATGTGGAAAGCATTTTCTGAACGCACAGTCCTTGAATACTCACGTATATATGGCTCATAAAATAAAAGAAAGAGTTCCAAAGCAACGTAAAAAATTTCAAGGGTACATGCAGGATATTCTAGGAAGAAACAGGATGAGTGGTAATACAAAGGAATCTAAATTAAAGATAGCAAGAGATTCAGTTGAAAAGACTGGCACTAAAAGAGAACCCCGTGAATGCCCAATTTGTCATAAAATTATTTGCTTTTTAGGTTATGGCAGACATTTGACCACACATACTGGCATCAAGCCACATCAGTGTAAATATTGTCCAAAAAGTTTTCGTTTATTTTCAAGTTTAAAATCTCATATGTATGTCCATTTAAATTTGAAGCCATTTGAATGTGATGTTTGTGATCAAAAGTTCAGACATTACACTACTTTGAAAGTACATAAAAGAGTTCATACAGGTGAAAAACCATATGTTTGTTCTGTATGTACGAAAGGATTTCGAAGTGCTTCTGGATTAAAAAGACATCAGAACCAAAGACAGCACCATATGCCAATATTGAATATTGAGGAATAA
- Protein Sequence
- MYQVFGNKNGSEKISNSPVQIKPNINESKTNGITFFEGEKKRVLVELNSKYGNFVDAKEVSEEALIEDVQSSRDIDLENIFLDQDTSDEEGTNGKKKFCNQSRIEVDPHLRSDLDLQCFQCLVVFSSRIDMEKHYESTGHTMAPNYKCSICSKAISKRKAYWDHMAMHRHLKKKSVCEICGAVVVSLHLKRHMLVHQEKSHICQYCGKGYAQKNTLTDHVNRKHKGEKKDMNTLCFVCGKLCNDLKGLTSHLNTHTDEKWKKLPHHCEECGKHFLNAQSLNTHVYMAHKIKERVPKQRKKFQGYMQDILGRNRMSGNTKESKLKIARDSVEKTGTKREPRECPICHKIICFLGYGRHLTTHTGIKPHQCKYCPKSFRLFSSLKSHMYVHLNLKPFECDVCDQKFRHYTTLKVHKRVHTGEKPYVCSVCTKGFRSASGLKRHQNQRQHHMPILNIEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -