Basic Information

Insect: Harmonia axyridis
Gene Symbol: Mrpl17
Assembly: None
Location: chr6:9492307-9496306[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.32 29 5.9 2.1 1 23 385 408 385 408 0.82

2 9 0.036 3.2 8.9 0.2 2 23 412 432 411 432 0.95

3 9 0.033 3 9.0 0.5 2 23 438 460 438 460 0.92

4 9 0.0001 0.0092 16.9 3.8 1 23 467 490 467 490 0.97

5 9 0.0029 0.26 12.3 3.6 1 23 496 519 496 519 0.96

6 9 1.4e-05 0.0013 19.6 5.4 1 23 525 547 525 547 0.97

7 9 1.7e-06 0.00015 22.5 0.8 1 23 553 576 553 576 0.98

8 9 1.3e-05 0.0011 19.8 1.6 1 23 584 606 584 606 0.98

9 9 0.00049 0.044 14.8 4.0 1 23 611 634 611 634 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.32	29	5.9	2.1	1	23	385	408	385	408	0.82
2	9	0.036	3.2	8.9	0.2	2	23	412	432	411	432	0.95
3	9	0.033	3	9.0	0.5	2	23	438	460	438	460	0.92
4	9	0.0001	0.0092	16.9	3.8	1	23	467	490	467	490	0.97
5	9	0.0029	0.26	12.3	3.6	1	23	496	519	496	519	0.96
6	9	1.4e-05	0.0013	19.6	5.4	1	23	525	547	525	547	0.97
7	9	1.7e-06	0.00015	22.5	0.8	1	23	553	576	553	576	0.98
8	9	1.3e-05	0.0011	19.8	1.6	1	23	584	606	584	606	0.98
9	9	0.00049	0.044	14.8	4.0	1	23	611	634	611	634	0.98

Sequence Information

Coding Sequence: ATGAATCAAGCTGATGTTTCTAAATTAGTATCTAGATTAAAAACGAAAGTAAATCCTCGGCTTAGAAAGTTTCGAAATCCAAATGGACCTGAAGGCAGATTAAATAAACTCAAAAAAACAGTCACTGCCTTATTCAAATACGAAAGAATAGAATTAAATTACCCCAGAGCTGATGAATCACGAATGTACGCCGAGAGACTTATTTCAGAAGCTATACGATATGGAGACTGCCACAAACCTACAATGGAAATGGCTGATTATTGGCTAATCGAAAAACAGTTGGTTCACAAATTGTTCAAAGTTTTGGTTCCTAGATTTCAAGATTATAATGTTTCCTATACAAAATTGTACAGAGCTCCAAAGCCACCTATTCCTGGTGATCAAAATCCAAAAGCAGTCTTAGAGTTAAGAGGTCATCCATATCCATCATTGTTACCGGATAATAGTTCCAACAAAAACTTGATACATAATGTACTTTTAGAAGAAGCGAAAAGAGCTTATAGAGCTAAAAAATATGCTGAAATTGCAGCTAAAATAGATGCAGTAGAAGAAAAATTGTCAACAATCAAATTGGAATCAGAAGATTCCAAAGCAGTTGAGCCTGCACAAGGTATTTCTCAATATGAGGAAATATCAGAACACGATGGTTACCCTAAAATAGCTTGTATTAGTTGTATTGATGAAATTCAACAAGCCACTAAAACCAGAAAGCGAATTTTGGAGTGCCATAAAAAGTTATTGAAACTAAACACTAATGAGTTAGAAGAAGAAAATAGGAACCATCCTGAAATTATTTTAGTAACTGATTATTCTGAAGAGTCTGAAGATATGCCATGCGAAATATCCCATGATGGATTAGAAGAAATTCTCACCTATGAAGATTGTAGTGAAGTTAATGGTTTAGATGATTTTGTAATTAAAACAGAATTGAGTGAAGATAGTAATGATATGACCTTTGAGGTTCTTGATCACTTAGATACTGAAAATGAAGTTAACATTGTAGAACTAGATAACAAATCAGAAGATGAACTCTTAAGGAATCAATCTTGTCGAAAATTCAAAAAAACAACCCTTGATTCCATAAAGACTATACTTTCAAGTGACATTAAGAAAAGGAAGAGAACTACTAGAAAAGTTCAGCGAGTTGATCAATATATTTGTGAAGAATGTGGAGAAAACTTCTCTTGTGATAAATATGCGTTTAATCTTCATAAAATGAAACATAAAAAGAGCCAATGTAAAATCTGTGGTATAGTTATCAGATCTGATAATATGAGTAAACATTTAGATAATCATACAAGTGGTCCCAGAGTCTGTGATTTGTGTGGAGTAACCTGTAAAAATATTGAAAGTTTGAGAGGCCATATATTTTACATGCATAAAAAATCTAAAGATGAGTACAAATGTGATCAGTGTTCTAGAACTTATCGACAGAAATATAAACTTGAGCAGCACAAAAACAAAGAACATATAGGGGCTCGAAGGCACATTTGTAATGTTTGTCAGAAGAAGTTCTTTACATTCAAAGATATGAACAGCCACATTAATATGACACATAAAAAACTACGTCCTCATATATGCAAGCATTGCAGCAAAGGTTTTTCTAGCAAATATGCACTGAAGACACACATTCGGCAACATACTAATGAGACTCCATACAAATGTTCTGTATGTGGGGAAGGTTTTAGGCAGAATGTCTCTCTTCGTACACATTTGAAGTCAAAACATAATATTCAAGAAGATAAAAATTTTCCCTGTGAATTTTGTGACAAATCATTTGCTTCCTGTTTTGCCCTGAAAGTTCATCTGAGGTTACATAATGACAACAGTTATCAATGTAGGGACTGTAAGGAATATTTCCATCAGAGTATTTATCTCTTTAATCACATGAAGACTGTACATAATATAGATGAGAATATGATAGATTTAAAGGAGTTTAAAACAATTTATGATGAACAAGAAATGTTGTCTTCAGAAGTTGGAAATACTATTAGTGAAGATTTGGAAGTTCTCAGTAATGAAGGATAA
Protein Sequence: MNQADVSKLVSRLKTKVNPRLRKFRNPNGPEGRLNKLKKTVTALFKYERIELNYPRADESRMYAERLISEAIRYGDCHKPTMEMADYWLIEKQLVHKLFKVLVPRFQDYNVSYTKLYRAPKPPIPGDQNPKAVLELRGHPYPSLLPDNSSNKNLIHNVLLEEAKRAYRAKKYAEIAAKIDAVEEKLSTIKLESEDSKAVEPAQGISQYEEISEHDGYPKIACISCIDEIQQATKTRKRILECHKKLLKLNTNELEEENRNHPEIILVTDYSEESEDMPCEISHDGLEEILTYEDCSEVNGLDDFVIKTELSEDSNDMTFEVLDHLDTENEVNIVELDNKSEDELLRNQSCRKFKKTTLDSIKTILSSDIKKRKRTTRKVQRVDQYICEECGENFSCDKYAFNLHKMKHKKSQCKICGIVIRSDNMSKHLDNHTSGPRVCDLCGVTCKNIESLRGHIFYMHKKSKDEYKCDQCSRTYRQKYKLEQHKNKEHIGARRHICNVCQKKFFTFKDMNSHINMTHKKLRPHICKHCSKGFSSKYALKTHIRQHTNETPYKCSVCGEGFRQNVSLRTHLKSKHNIQEDKNFPCEFCDKSFASCFALKVHLRLHNDNSYQCRDCKEYFHQSIYLFNHMKTVHNIDENMIDLKEFKTIYDEQEMLSSEVGNTISEDLEVLSNEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -