Haxy012084.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Harmonia axyridis
Gene Symbol
-
Assembly
None
Location
chr2:48469353-48473908[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0019 0.17 12.9 2.9 2 23 98 120 97 120 0.95
2 16 0.011 1 10.5 9.3 1 23 126 149 126 149 0.96
3 16 0.0036 0.32 12.0 3.3 2 23 156 178 155 178 0.95
4 16 0.0041 0.37 11.9 7.6 1 23 184 207 184 207 0.96
5 16 0.0019 0.17 12.9 2.9 2 23 214 236 213 236 0.95
6 16 0.011 1 10.5 9.3 1 23 242 265 242 265 0.96
7 16 0.018 1.6 9.8 5.0 2 23 272 294 271 294 0.95
8 16 0.011 1 10.5 9.3 1 23 300 323 300 323 0.96
9 16 0.0036 0.32 12.0 3.3 2 23 330 352 329 352 0.95
10 16 0.0041 0.37 11.9 7.6 1 23 358 381 358 381 0.96
11 16 0.00094 0.084 13.9 3.3 2 23 388 410 387 410 0.95
12 16 0.0041 0.37 11.9 7.6 1 23 416 439 416 439 0.96
13 16 0.0036 0.32 12.0 3.3 2 23 446 468 445 468 0.95
14 16 0.0048 0.43 11.6 1.5 3 23 474 497 474 497 0.91
15 16 0.00032 0.029 15.3 1.5 2 23 504 526 503 526 0.95
16 16 0.062 5.5 8.2 0.2 1 23 532 555 532 555 0.92

Sequence Information

Coding Sequence
ATGAAAGAGGTGGCAAATGAAATTGATATAAATATCAAGAAATCAGAATATGGCGAAAACTTCAAAACTCATGTAGAAAAAACAGAAGATGTTGATATATCCGAACAATTTATTGATGAGAATGGAGTTCATGAGAGGACAATATACTTGCAAAATGTTGATGAAACTAACTTGGGGCATTCATTCAAACTCAATGATTTTCATGATGAATCTTTAAAAGTAGAGGAATTACCACAATTTCATGGAGAATCTTCTGATTTGAATTCTGTCCATTTAAATTTGAAGGAACAGAAGTGCCACCTGTGTGATTTTGCTACAAATCGTAAATGGGATCTCAAACATCATATAGATTCAGTTCATTTAAAATTGAAAGGCTGTAAGTGTCACCTGTGTGATTTTACTACAAACAGTAAGAGGCATCTCAAACAACATATAAATTCTTTCCATTTAAATTTGAAGGAACAGAAGTGCCACCTGTGTGATTTTGCTACAAATCGTAAATGGTATCTCAAACATCATATAGATTCAGTTCATTTAAAATTGAAAGGCTGTAAGTGTCACCTGTGTGATTTTACTACAAATAGTAAGGGGCATCTCAACCAACATATAAATTCCTTCCATTTAAATTTGAAGGAACAGAAGTGCCACCTGTGTGATTTTGCTACAAATCGTAAATGGGATCTCAAACATCATATAGATTCAGTTCATTTAAAATTGAAAGGCTGTAAGTGTCACCTGTGTGATTTCACTACAAACAGTAAGAGGCATCTCAAACAACATATAAATTCTTTCCATTTAAATTTGAAGGAACAGAAGTGCCACCTGTGTGATTTTGCTACAAATCATAAATGGTATCTCAAACATCATATAGATTCAGTTCATTTAAAATTGAAAGGCTGTAAGTGTCACCTGTGTGATTTTACTACAAACAGTAAGAGGCATCTCAAACAACATATAAATTCTTTCCATTTAAATTTGAAGGAACAGAAGTGCCACCTGTGTGATTTTGCTACAAATCGTAAATGGTATCTCAAACATCATATAGATTCAGTTCATTTAAAATTGAAAGGCTGTAAGTGTCACCTGTGTGATTTTACTACAAATAGTAAGGGGCATCTCAACCAACATATAAATTCCTTCCATTTAAATTTGAAGGAACAGAAGTGCCACCTGTGTGATTTTGCTACAAATCGTAAATGGAATCTCAAACATCATATAGATTCAGTTCATTTAAAATTGAAAGGCTGTAAGTGTCACCTGTGTGATTTTACTACAAATAGTAAGGGGCATCTCAACCAACATATAAATTCCTTCCATTTAAATTTGAAGGAACAGAAGTGCCACCTGTGTGATTTTGCTACAAATCGTAAATGGTATCTCAAACATCATATAGATTCAGTTCATTTAAAATTGAAAGGCTGTAAGTATCCCCTGTGTGATTTTACTACAAATAGTAAGGGGCATCTCAAACAACATATAAATTCTGTCCATTTAAATTTGAAGGAACAGAAGTGCCACCTGTGTGATTTTGCTACAAATCGTAAATGGGATCTCAAACGGCATATAGATTCAGTCCATTTAAATTTAAAGGAACATAAGTGTCCCTTGTGTGAATTTGATGCAAATCGTAAAGGGGATATCAAACGACATATAGATGCAGTTCATTGA
Protein Sequence
MKEVANEIDINIKKSEYGENFKTHVEKTEDVDISEQFIDENGVHERTIYLQNVDETNLGHSFKLNDFHDESLKVEELPQFHGESSDLNSVHLNLKEQKCHLCDFATNRKWDLKHHIDSVHLKLKGCKCHLCDFTTNSKRHLKQHINSFHLNLKEQKCHLCDFATNRKWYLKHHIDSVHLKLKGCKCHLCDFTTNSKGHLNQHINSFHLNLKEQKCHLCDFATNRKWDLKHHIDSVHLKLKGCKCHLCDFTTNSKRHLKQHINSFHLNLKEQKCHLCDFATNHKWYLKHHIDSVHLKLKGCKCHLCDFTTNSKRHLKQHINSFHLNLKEQKCHLCDFATNRKWYLKHHIDSVHLKLKGCKCHLCDFTTNSKGHLNQHINSFHLNLKEQKCHLCDFATNRKWNLKHHIDSVHLKLKGCKCHLCDFTTNSKGHLNQHINSFHLNLKEQKCHLCDFATNRKWYLKHHIDSVHLKLKGCKYPLCDFTTNSKGHLKQHINSVHLNLKEQKCHLCDFATNRKWDLKRHIDSVHLNLKEHKCPLCEFDANRKGDIKRHIDAVH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-