Haxy008111.1
Basic Information
- Insect
- Harmonia axyridis
- Gene Symbol
- -
- Assembly
- None
- Location
- chr1:85341300-85344194[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0089 0.79 10.8 2.5 1 23 99 122 99 122 0.94 2 19 0.0061 0.54 11.3 0.4 2 23 129 151 128 151 0.92 3 19 0.0044 0.39 11.8 1.3 1 23 157 180 157 180 0.93 4 19 0.00081 0.072 14.1 2.1 1 23 186 209 186 209 0.96 5 19 0.0018 0.16 13.0 2.9 1 23 215 238 215 238 0.94 6 19 0.22 19 6.4 6.7 1 23 244 267 244 267 0.96 7 19 0.0013 0.11 13.4 1.0 1 23 273 296 273 296 0.96 8 19 0.0014 0.12 13.3 2.9 1 23 302 325 302 325 0.94 9 19 0.0025 0.22 12.6 0.4 1 23 331 354 331 354 0.93 10 19 0.0025 0.22 12.5 4.5 1 23 360 383 360 383 0.96 11 19 6.8 6.1e+02 1.7 0.6 11 23 395 408 390 408 0.86 12 19 0.0025 0.22 12.6 0.4 1 23 414 437 414 437 0.93 13 19 1.4 1.3e+02 3.9 4.9 1 23 443 466 443 466 0.95 14 19 0.00052 0.046 14.7 1.4 1 23 472 495 472 495 0.98 15 19 0.0023 0.21 12.6 3.2 1 23 501 524 501 524 0.94 16 19 6.5 5.8e+02 1.8 1.4 11 23 536 549 531 549 0.88 17 19 0.00086 0.076 14.0 2.5 1 23 555 578 555 578 0.96 18 19 0.029 2.6 9.2 3.5 1 23 584 607 584 607 0.92 19 19 0.00023 0.02 15.8 2.4 2 23 614 636 613 636 0.95
Sequence Information
- Coding Sequence
- ATGGAAACATACTCAAAAATTTTCCTAGATGAAAATCATGACAGAGTAAAGATGGAAATGGGAGAAGGTGCTGATAGCTATGAAAAAGGAAACTCATATGAATTGGATTTTCAATACATGACTGATGAAAGGCATATTGAGGATAAAAAGACTGAAATTATGGATATTGTTCATCATTACACTGATGAGAATGGAATAAGATTGTCTTTCAAATATGAAACAGGCGACTTTGCTTTCAACCAGAAAAGCAATCTTGAAGGGCAAATAGATTCTGTTCATTTGAATGAAAGAGAACATAAATGTCACTTATGTAAGTTTGCAGCCAATCAGAAAAATAACCTCAAAATTCATATAGGTTCTGTCCATTTGAACATAAAAGAATTGAAATGTCACTTATGTGAGTATGCGGCAAGCAAGAATGAAACCCTTCAAAATCATATGGATGCTGTCCATTTGAATAAAAAAGAACATAAATGTCACTTATGTGAGTATGCGGCAAGCAAGAATGAAACCCTTCAAAATCATATGGATGCTGTCCATTTGAATAAAAAAGAACATAAATGTCACTTATGTGATTATGCATCCAACCGGAAAGTTGACCTCAAACTTCATATTGATTCTATCCATTTGAATAAAAAAGAACATAAATGTCACTTATGTAATTATGCAGCCAACCGGAAAGCTTATCTCAAAAAGCATATAGATAATATCCATTTGAATAAAAGAAAACATAAATGTCACTTATGTAATTATGCAGCCAATCATAAATGTTATCTTGAACAGCATATAGATTCTGTCCATTTGAACATAAAAGAATTTAAATGTCACTTATGTGAGTATGCTGCAAGCAAGAAAGAAACCCTTCAAAATCATATAGATTCTGTCCATTTGAATAAAAAAGAACATAAATGTCACTTATGTAATTATGCAGCCAACCGGAAAGCTTCTCTCAAAAAGCATATAGATTATATCCATTTGAACATAAAACAATTTAAATGTCACTTATGTGAGTATGCTGCAAGCACAAAAATAACCCTTCAAAATCATATAGATGCTGTTCATTTGAATAAAAGAAAACATAAATGTCACTTATGTAATTATGCAGCCAATCATAAATCTTATCTCGAAAAGCATATAGATTCTGTCCATTTGAACATAAAAGAATTTAAATGTCACTTATCCAACCGGAAAGCTTCTCTCAAAAAGCATATAGATTATATCCATTTGAACATAAAAGAATTTAAATGTCACTTATGTGAGTATGCTGCAAGCACAAAAATAACCCTTCAAAATCATATAGATGCTGTTCATTTGAATAAAAGAAAACATAAATGTCACTTATGTAGTTATGCAGCCAATTGTAAATCTTATCTCGAAAAGCATATAGATTCTGTCCATTTGAACATAAAAGAATTTAAATGTCACTTATGTGAGTATGCTGCAAGCAAGAAAGAAACCCTTCGAAATCATATAAATTCTGTCCATTTGAATAAAAAAGAACATAAATGTCACTTATGTAATTATGCAGCCAACCGGAAAGCTTATCTCAAAAAGCATATAGATTATATCCATTTGAACATAAAACAATTTAAATGTCACTTATCCAATCATAAATCTTATCTCGAAAAGCATATAGATTCTGTCCATTTGAACATAAAAGAATTTAAATGTCACTTTTGTGAGTATGCTACAAGCAAGAAAGAAACCCTTCGAAATCATATAGATTCTGTCCATTTGAATGAAAAAGAACATAAATGTTACTTATGTAATTATGCAGCCAATCATAAACCTCATCTCAAAAAGCATATAGATGCTGTCCATTTGAATAAAAGAGAACTTAAATGTCACTTATGTGATTATGCAGCCAACCGGAAAGATCACCTCAAAAAGCATATAGATTCTGTCCATTTGAACATAAAGAATTACTAA
- Protein Sequence
- METYSKIFLDENHDRVKMEMGEGADSYEKGNSYELDFQYMTDERHIEDKKTEIMDIVHHYTDENGIRLSFKYETGDFAFNQKSNLEGQIDSVHLNEREHKCHLCKFAANQKNNLKIHIGSVHLNIKELKCHLCEYAASKNETLQNHMDAVHLNKKEHKCHLCEYAASKNETLQNHMDAVHLNKKEHKCHLCDYASNRKVDLKLHIDSIHLNKKEHKCHLCNYAANRKAYLKKHIDNIHLNKRKHKCHLCNYAANHKCYLEQHIDSVHLNIKEFKCHLCEYAASKKETLQNHIDSVHLNKKEHKCHLCNYAANRKASLKKHIDYIHLNIKQFKCHLCEYAASTKITLQNHIDAVHLNKRKHKCHLCNYAANHKSYLEKHIDSVHLNIKEFKCHLSNRKASLKKHIDYIHLNIKEFKCHLCEYAASTKITLQNHIDAVHLNKRKHKCHLCSYAANCKSYLEKHIDSVHLNIKEFKCHLCEYAASKKETLRNHINSVHLNKKEHKCHLCNYAANRKAYLKKHIDYIHLNIKQFKCHLSNHKSYLEKHIDSVHLNIKEFKCHFCEYATSKKETLRNHIDSVHLNEKEHKCYLCNYAANHKPHLKKHIDAVHLNKRELKCHLCDYAANRKDHLKKHIDSVHLNIKNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -