Haxy018683.1
Basic Information
- Insect
- Harmonia axyridis
- Gene Symbol
- HINFP
- Assembly
- None
- Location
- chr4:13786280-13795347[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.3e-05 0.0029 18.4 2.9 1 23 104 126 104 126 0.98 2 13 3.6e-06 0.00032 21.5 2.9 1 23 132 154 132 154 0.98 3 13 1.1e-06 9.6e-05 23.1 0.4 1 23 160 182 160 182 0.98 4 13 8.1e-06 0.00072 20.4 3.0 3 23 202 222 200 222 0.95 5 13 1.8 1.6e+02 3.6 0.2 1 21 228 248 228 249 0.82 6 13 0.033 3 9.0 1.0 1 23 310 334 310 334 0.94 7 13 0.24 21 6.3 0.5 3 23 349 371 348 371 0.93 8 13 0.016 1.5 10.0 0.3 3 20 446 465 444 468 0.88 9 13 0.00015 0.013 16.4 0.5 1 23 504 526 504 526 0.98 10 13 4.5e-06 0.0004 21.2 1.2 1 23 530 553 530 553 0.96 11 13 0.062 5.6 8.1 1.0 1 23 559 581 559 581 0.98 12 13 0.011 0.96 10.5 1.9 2 23 588 610 587 610 0.96 13 13 0.036 3.2 8.9 0.7 1 19 617 635 617 640 0.79
Sequence Information
- Coding Sequence
- ATGGAAGTGTTATCAGAATGTGGTATTGAACAGATTTTAGCCGGTGATAAATTCCCAAAGGGAATGTGTAGGTCATGCCTTGAGAAACTTCAAATGATTTATGAGTTTAGGAAAATGTGTGAAGACTCTAAAGAAAAGTTCATGGAAATAACCCTCCTAAATAAAGTTGAGTCTCAAGAATCTTCAAAAGTCACAAATTTTATGAAGCCCTTGAAAGATTTTCATTTCGATCTAGAGGTTGATAAAGATGATGGAAATGAAGAGGAATGTTTAAACTTGGCTAATCAACCGGCAAAATCTTACGAATTATTTTCTTGTCCAATTTGCCAAAAAGAATATACTTCAAAGTATAACATGCATCGTCATGAAAAAATTCATATTAATGCTGAAGAATTCACTTGCAAAATATGTAAAAAACAATTTTCTCGTAGAACTGACGTGAAAAGACATATGTCTATTCATAGTGGAACTAAGCCATATATTTGTGTTGTCTGTAATACTTCATTCAGCCAGAGTGGATCACTCTCAAGGCATATGAAAGTACATGAAGAGTTCAAAAATCTGCCATGTCCGAAAAAAAGTTCGGAGGTGATATCACATTTATGTATGATGTGTGGAAAATCATTTAAGACCTCATCTAGTTTATCAATCCATTTGAAGAGACATACAGGAGAGAAAAGCCATCAATGTACAATCTGTGACTTGAGTGATCCGTATTTTTTGGAATTGGAGAAACATCTCAGAAATTTCTGCTTGAAATTACATGCTTTTAACGCATATCCAGTCTCATTGCCTGAAGACTCCACATTTGCTATTGAAATTGGTACAACTAAGTTATCTTGTTTGGAGTTCAATGATAATCATATATTCGAGGATACATCTAAAATTAAGAAGAAAATTAATAAAATATCTGAACAACCTATAACATTCCCATGTCGATTTAAGGAATGCGGCCAAGAATTCACTGATTATTTCAAATTCGACAATCATTTGATTAGCCATATAAACCAAGAGGACTTCACAGGAAAAATAATTCATGCCTTTTGCCAGTATGGTGATTGTGATTTGAGGTTTGTTAGTTATCTACATGCAATACAACACATGTCCATTCATGGACATCATGATAAACTGTGCTATCTTGGAGAAATAGCTGTAAAAAAAAATTCACTGCCTGAGTGTAAACTGGAAAATATTTTCACCTGCCCAGAATCTGAGGTTGTCTACCATTGTGAATGGGATAGTTGTAATATGGTAATTGATACCATTTGTAATTTTTTGTGTCATATCAAAATGCATTCAATGGGGAATTCTGTAAAGGATAAGAAGAAGATTGATTGTGAATGGAAAGGTTGTAAACAGCAATTCAAGATGCAATATCAATTAAGCAAGCATATGCCAGTACATACCAAGACTAAGTATTTAGCATGTATAACTTGTGGCAATTCGTTCTCTTCCATGGCCCGATTTTCAGATCATAGAAGCAAACAAATCCCAATTGAGAAGCAAAATTATAAATGTTCGCAATGCTTCAAGGTGTTTGCTACCGAAAGTTTGATTCGTGACCATGTTCGAGCTCACATCAACCAGTACAAATGTCCCATGTGTGACATGACTTGTCCAAAACCTTCAAATTTGATCAACCATATAAGATTTCGACATATCAATGAGCGATTATACCAATGTAATCTTTGTGAGCATTCGGCGCTGTCCAAACAAAATCTTGAACAGCATCTAATTTCTCATTGTACCGAAATGCTTATGGTTTGTGATGAATGTGATTTTGCCTGTCGATCAATACATACTCTGGATAGACATATACAGAGGGAACATCTGAAGGATAGACAAATGTTCGAATGCCATATATGTAAAAAACGATATAAAAGAGGTAACATCTTATCACAGCATCTGGTGGCAGTACACAGCGTCCAATATCCATCTGGACATTCCAGGTTCAGGTATAAAAAAGAAGCTGATGGAATAGCCAGATTGCAAACGATAAGATATGAAACAGTTAATGTTATAAAAGAAATTATCGAAAGTAAAAAGAAGGAGGAAATCCCAGACAAGAAAGTATTGAAATGTACTATCAAGAAAAAAAAAGATGGAGACAATATGTCAGTTGCAGTAAACATTGAAGAATGCAGTTCTTCGGACGAAGAGGAAAGGCCTACAAAAAAGAGGAAAAAATCATCAAATAATGTTTTATTGACAGTACTTGATCTTGATGATAAAGGAAATGTAGTATCAGAAGTTACAGAAACCCAGGAGGTTATTGCACCTGAACCGGATATGATGGAAATTTGA
- Protein Sequence
- MEVLSECGIEQILAGDKFPKGMCRSCLEKLQMIYEFRKMCEDSKEKFMEITLLNKVESQESSKVTNFMKPLKDFHFDLEVDKDDGNEEECLNLANQPAKSYELFSCPICQKEYTSKYNMHRHEKIHINAEEFTCKICKKQFSRRTDVKRHMSIHSGTKPYICVVCNTSFSQSGSLSRHMKVHEEFKNLPCPKKSSEVISHLCMMCGKSFKTSSSLSIHLKRHTGEKSHQCTICDLSDPYFLELEKHLRNFCLKLHAFNAYPVSLPEDSTFAIEIGTTKLSCLEFNDNHIFEDTSKIKKKINKISEQPITFPCRFKECGQEFTDYFKFDNHLISHINQEDFTGKIIHAFCQYGDCDLRFVSYLHAIQHMSIHGHHDKLCYLGEIAVKKNSLPECKLENIFTCPESEVVYHCEWDSCNMVIDTICNFLCHIKMHSMGNSVKDKKKIDCEWKGCKQQFKMQYQLSKHMPVHTKTKYLACITCGNSFSSMARFSDHRSKQIPIEKQNYKCSQCFKVFATESLIRDHVRAHINQYKCPMCDMTCPKPSNLINHIRFRHINERLYQCNLCEHSALSKQNLEQHLISHCTEMLMVCDECDFACRSIHTLDRHIQREHLKDRQMFECHICKKRYKRGNILSQHLVAVHSVQYPSGHSRFRYKKEADGIARLQTIRYETVNVIKEIIESKKKEEIPDKKVLKCTIKKKKDGDNMSVAVNIEECSSSDEEERPTKKRKKSSNNVLLTVLDLDDKGNVVSEVTETQEVIAPEPDMMEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -