Haxy012171.1
Basic Information
- Insect
- Harmonia axyridis
- Gene Symbol
- -
- Assembly
- None
- Location
- chr2:4203631-4209108[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0048 0.43 11.6 6.7 1 23 193 216 193 216 0.96 2 20 7.2e-06 0.00064 20.5 2.2 1 23 222 245 222 245 0.98 3 20 0.079 7.1 7.8 4.0 1 23 251 274 251 274 0.96 4 20 0.0077 0.68 11.0 3.5 1 23 280 303 280 303 0.96 5 20 0.00038 0.034 15.1 2.2 1 23 309 332 309 332 0.97 6 20 0.00054 0.048 14.6 2.9 1 23 337 360 337 360 0.93 7 20 0.056 5 8.3 3.0 1 23 395 418 395 418 0.96 8 20 0.005 0.44 11.6 2.9 1 23 430 453 430 453 0.97 9 20 0.046 4.1 8.6 0.5 2 23 460 482 459 482 0.96 10 20 0.047 4.2 8.5 3.1 1 23 642 665 642 665 0.94 11 20 0.0013 0.12 13.4 1.0 1 23 671 694 671 694 0.97 12 20 0.00035 0.032 15.2 3.1 1 23 700 723 700 723 0.97 13 20 0.006 0.54 11.3 0.8 1 23 758 781 758 781 0.95 14 20 0.32 28 5.9 3.0 1 23 787 810 787 810 0.94 15 20 0.011 0.96 10.5 3.1 1 23 816 839 816 839 0.97 16 20 0.04 3.6 8.7 4.1 1 23 845 868 845 868 0.97 17 20 0.00027 0.025 15.5 3.8 1 23 874 897 874 897 0.97 18 20 0.021 1.8 9.7 6.9 1 23 903 926 903 926 0.97 19 20 3e-05 0.0027 18.6 0.9 1 23 932 955 932 955 0.96 20 20 0.0097 0.87 10.7 3.7 1 23 961 984 961 984 0.94
Sequence Information
- Coding Sequence
- ATGAAAATTGTTGAACAATCTGTCGAAAAGACACCAAGCAATTTGCCTAGTGAACAAATTCAGAATTTTATTGCTGAAGAAAAGAGCTTTCAATTCCACAAGATCAAGATTGAAGATAAAAGTACCGATGAAGAATTTACTAATGGAAATCAAGTTCTTAGTGAAGAAGCATTTATAAAAAACAATGAGAATAATATTGATAATCACTATGATACAGGTTTTTCACCAACAAATATGGAAATTGGTGGACAACCTGTTAAGATAAAAACAGAACCACCTTCCAGTGATTCAACTCAAGTTTTCGAACATGTAGAAGGGAGCTTTGGAACATGTAAGGTTGAACCTGGAGAATCAGATGCAGTCGAAGACTTTGTTTCTCTAAGCCAAGTACAAAGTTTTCCTCCTACCTTTAATATGAAAGAAAATGCTGAAGATGGAAGAAATTGTCAATTAATTCCAAAACAAGAGATAAAAGAAGAAGTTCTCGATTCACAACAACAGGATTCTCAGTGTAGTGAGTCTTCCTCTAAAAATAAACGTAAACGTAAAGATAGTGCTCATTCGAATATAAAACCATACAAGTGTGATATTTGCAATTTTTCCTCAAAACATAAATGCCACCTTTTGAGACATATAGATTCTGTCCATTTGAATTTGAAGCAACATAAGTGCGATTATTGTGATTTTGCTACAAGTCGAAAATCAGACCTTAAATCGCATATAAATACTGTTCATCTAAACTTGAAGCAGCACAAGTGCAATTTATGTGATTTTGCCACGAATCAGAAGTGTCGATTAAAAACGCACATAGCTTCCGTTCATATGAATTCAAAGCCGCATAAGTGTGAGATATGTGATTATTCTACCTGTTGGAAATCAGATCTCAAATCGCATATAAATAATATGCATCTAAATTTGAAACAGTTCAAATGCGATACATGTGATTTTGCTACAAACCGAAAGTATCATCTAGAATCACATGTAAATTCAGTTCATTTGAATATAAAGCATTCTTGCAATTTATGTAATTCCTCTTTTACTCACCAAAATGCTCTAAAAGCACATATGGAGTTTGTTCATTTGAATACGAAACCGCACAAGTGCGATTTGTGTGATTTTGCTGCGCAATATAGATGTATTCTGAAAAAGCACATAGATTCTGTTCATTTGAAACTGAAGCAACATAAATGTGATTTATGCGAATACACTACAAACCATGTAACATATCTCAAATCCCACATAGATTCAGTTCATTTGAATAAAAGGCACTTGTGTGAATTGTATCAACATAAGTGTCATTTGTGTAATTTTGGTACGAATTACAAGGCCTATCTTGAAGCACATATAAAGTCAGTCCATTTAAACTTGAAAGAAAATAAATGTCATTTGTGCGAGTATGCTACAAACTGGAAATCTGATCTTAGGGCACATATAGAGTCTGTGCATGGAACTTCGTATTCTGTACATGAACCTATAGATTCTGTACATGAACCTATAGATTCTGTACATGAACATTCAGTTTCTATGCATGAACCTCCAGTTTCTGTCAATGAACCCTTAAATTCGGTGCCTGAACCTCCAAATTCTGTGCATGAACCTTTAATTTCTGTTCTTGAACATTCAGATTCTATTCATGAACCTCCAAATTCTGTCCACAAACCTTTAGATTCTGTGTCTGAACCTAAAGATTATGACGAAGAGGGATTTAAAGTACAAAATATCAAGACTGAAGATATAGATATTGTCGAAGAATTAATTGATATCAATGGAGAACATATTGATGGAAATCAAGTTCATAATAACAAAACATCAATACAGAAAATTGAAAGTAATATAAATTCCACAAATACATCAGAAGAAAATACTCTTCTAAAAGAATATTTGGAAGACAGGAAAGATTTTGTTAACTTCAATTTGAGGCAACACAAGTGCAATTTTTGCGAGTATACTACAAACAAAAAATCTCGTCTCAAAATTCATGTAGATTCTGTTCATCTGAATTTGAAGCAATATAAGTGTACATTATGTGATTACTCCTCAAATCGGAAACATGATCTTGGTGTACATGTAGATACTGTTCATTTGAATTTAAAGCATCATAAGTGTACATTATGTGATTACTCTACAAATCGGAAACATGATCTCAGTGTGCACATAGAAACTGTTCATTCTGATCTGAAACAGCATAAGTGCTATTTATGTGATTTTTCTTCAAATTACAAAAAAATTGTCAAACAACATATAGATTCTGTTCACTTCAATTTGAAGCAACATAAGTGTCAATTATGTATTTATGCAACAAGTCGGAAATCAGATCTTAAGGCACATATTGATTCTATTCATTTGAATTTAAAGCAACATAAGTGTCACTTATGTGATTTTGCTTCAAATCTGAAAGTTCGCCTCAAAAAACATATAGATAATGTCCATTTGAATTTGAAGCAGCATAAATGTCATTTATGTAATTATGTTGCATATCAGAAATATGAAGTTACCAAACATATAGATACTGTTCACATCAAGTCAAGGCACCATAAGTGTCAATTATGCGAGTACTCTACAAATTGGAAATCTCATCTTAAAACACATATAAATTCTGTTCATTTAAATATAAAGCAACATAAATGTGATTATTGTGATTATGCATCAAATCGAAAAGTTCATCTCAGCAAACATATAAATTCTCTCCATTTGAATATCAATCAACATAAGTGTCACTTATGTAGTTTTGGTACAAATCACAAACATAATCTTGAAGCACATATAAATTCTGTTCATTTGAAGTTGAAACAACATACATGTCCTTTATGTGACTACGCTACAAATCGAAAGAGTGATCTTAAGGCACATACAAATTCTGTGCATTTGAATTTGAAGCAACATAAGTGTAACTTATGTGATTTTGCTACAAATTATAAACATAATCTTAAATCACATGTAGATTCAGTTCACTTGAATTCTATCAAGAAAGAAGTTTTCCCAAGGAAGGAATAA
- Protein Sequence
- MKIVEQSVEKTPSNLPSEQIQNFIAEEKSFQFHKIKIEDKSTDEEFTNGNQVLSEEAFIKNNENNIDNHYDTGFSPTNMEIGGQPVKIKTEPPSSDSTQVFEHVEGSFGTCKVEPGESDAVEDFVSLSQVQSFPPTFNMKENAEDGRNCQLIPKQEIKEEVLDSQQQDSQCSESSSKNKRKRKDSAHSNIKPYKCDICNFSSKHKCHLLRHIDSVHLNLKQHKCDYCDFATSRKSDLKSHINTVHLNLKQHKCNLCDFATNQKCRLKTHIASVHMNSKPHKCEICDYSTCWKSDLKSHINNMHLNLKQFKCDTCDFATNRKYHLESHVNSVHLNIKHSCNLCNSSFTHQNALKAHMEFVHLNTKPHKCDLCDFAAQYRCILKKHIDSVHLKLKQHKCDLCEYTTNHVTYLKSHIDSVHLNKRHLCELYQHKCHLCNFGTNYKAYLEAHIKSVHLNLKENKCHLCEYATNWKSDLRAHIESVHGTSYSVHEPIDSVHEPIDSVHEHSVSMHEPPVSVNEPLNSVPEPPNSVHEPLISVLEHSDSIHEPPNSVHKPLDSVSEPKDYDEEGFKVQNIKTEDIDIVEELIDINGEHIDGNQVHNNKTSIQKIESNINSTNTSEENTLLKEYLEDRKDFVNFNLRQHKCNFCEYTTNKKSRLKIHVDSVHLNLKQYKCTLCDYSSNRKHDLGVHVDTVHLNLKHHKCTLCDYSTNRKHDLSVHIETVHSDLKQHKCYLCDFSSNYKKIVKQHIDSVHFNLKQHKCQLCIYATSRKSDLKAHIDSIHLNLKQHKCHLCDFASNLKVRLKKHIDNVHLNLKQHKCHLCNYVAYQKYEVTKHIDTVHIKSRHHKCQLCEYSTNWKSHLKTHINSVHLNIKQHKCDYCDYASNRKVHLSKHINSLHLNINQHKCHLCSFGTNHKHNLEAHINSVHLKLKQHTCPLCDYATNRKSDLKAHTNSVHLNLKQHKCNLCDFATNYKHNLKSHVDSVHLNSIKKEVFPRKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -