Basic Information

Insect: Harmonia axyridis
Gene Symbol: -
Assembly: None
Location: chr2:21018929-21022820[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0041 0.36 11.9 1.0 3 23 9 30 8 30 0.97

2 16 0.0061 0.54 11.3 2.5 1 23 36 59 36 59 0.96

3 16 0.0038 0.34 12.0 3.6 1 23 65 88 60 88 0.95

4 16 0.0012 0.11 13.6 2.3 1 23 94 117 94 117 0.96

5 16 0.075 6.7 7.9 1.9 1 23 123 146 123 146 0.97

6 16 0.00013 0.012 16.6 3.2 1 23 152 175 152 175 0.96

7 16 0.00071 0.063 14.2 1.2 1 23 181 204 181 204 0.96

8 16 0.0082 0.73 10.9 2.9 1 23 210 233 210 233 0.92

9 16 0.00092 0.082 13.9 3.5 1 23 239 262 239 262 0.96

10 16 0.0026 0.24 12.5 3.7 1 23 268 291 268 291 0.96

11 16 0.00014 0.012 16.5 1.1 1 23 297 320 297 320 0.96

12 16 0.0018 0.16 13.0 1.0 1 23 326 349 326 349 0.96

13 16 0.011 0.99 10.5 3.7 1 23 355 378 355 378 0.96

14 16 0.00024 0.021 15.8 0.6 1 23 384 407 384 407 0.96

15 16 0.0003 0.027 15.4 1.5 1 23 413 436 413 436 0.96

16 16 0.00053 0.048 14.6 1.8 1 23 442 465 437 465 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0041	0.36	11.9	1.0	3	23	9	30	8	30	0.97
2	16	0.0061	0.54	11.3	2.5	1	23	36	59	36	59	0.96
3	16	0.0038	0.34	12.0	3.6	1	23	65	88	60	88	0.95
4	16	0.0012	0.11	13.6	2.3	1	23	94	117	94	117	0.96
5	16	0.075	6.7	7.9	1.9	1	23	123	146	123	146	0.97
6	16	0.00013	0.012	16.6	3.2	1	23	152	175	152	175	0.96
7	16	0.00071	0.063	14.2	1.2	1	23	181	204	181	204	0.96
8	16	0.0082	0.73	10.9	2.9	1	23	210	233	210	233	0.92
9	16	0.00092	0.082	13.9	3.5	1	23	239	262	239	262	0.96
10	16	0.0026	0.24	12.5	3.7	1	23	268	291	268	291	0.96
11	16	0.00014	0.012	16.5	1.1	1	23	297	320	297	320	0.96
12	16	0.0018	0.16	13.0	1.0	1	23	326	349	326	349	0.96
13	16	0.011	0.99	10.5	3.7	1	23	355	378	355	378	0.96
14	16	0.00024	0.021	15.8	0.6	1	23	384	407	384	407	0.96
15	16	0.0003	0.027	15.4	1.5	1	23	413	436	413	436	0.96
16	16	0.00053	0.048	14.6	1.8	1	23	442	465	437	465	0.97

Sequence Information

Coding Sequence: ATGATTGATTCACAGCAAGAAGATTGTCATCTTTGTGAGTTTTCTTCTAAAAATAAATATGAACTTGATTATCATATACGTATTGTTCATTTGAAATGGAAGCCATATAAGTGTAATAAGTGTGATTATACCACAAAGCTTGTATGTAGTCTACAAACACATATAGATTCAGTTCATTCCAACTTGAAGAAACATAAATGCCATTTGTGTGATTATGCTTCAAACCGAACATATGATCTCAAAAATCATGTGAATTTTGTTCATTTAAATTCAAGTCCTCATAAATGTCAATTATGTGATTTCACTTCTATTAGTAAGTTTAATCTCAAGACTCATATAGATTCTGTTCATATAAATTTGAAACGATATAAATGTGATTCATGTGATTATGCTACAAATTATAAACATATCTTAAAAACTCATGTGAATTCCGTTCATTTGAATTCAAAGCCTCATAAATGTCATTTATGTGATGTCACTTATATTCGAAAGTTCAATCTCAAATTACATATAGATTCTGTTCATTTAAATTTCAAACAACATAAATGTGATTCATGTGATTATGCTACAAATAAGAAATCTGACCTCAAATTACATATAGATTCCGTTCATTTAAATTTGAAACAACATAAATGTGATTCATGTGATTATGCTGCAAATAAGAAATCTCACCTCAAATCGCATATAGATTTCGTTCATTTAAACTTGAAACAACATAAATGTGATTCATGTGATTATGCTACAAATAAGAAATCTCACCTCAAATCGCATATAGATTCCGTTCATTTAAATTTGAAACAACATAAATGTGATTCATGTGATTTTGCTACAAATAAGAAATCTCACCTCAAATCGCATATAGATTCCGTTCATTTAAATTTGAAACAACATAAATGTGATTCATGTGATTATGCTACAAATAATAAATCTGACCTTAAATCGCATATAGATTCCGTTCATTTAAATTTGAAACAACATAAATGTGATTCATGTGATTATGCTACAAATAAGAAATCTGGCCTCAAATTACATATAGATTCCGTTCATTTAAATTTGAAACAACATAAATGTGATTCATGTGATTATGCTACAAATAAGAAATTTCACCTCAAATTACATATAGATTCCGTTCATTTAAATTTGAAACAATATAAATGTGATTCATGTGATTATTCTACAAATAAGAAATCTGGCCTCAAATTACATATAGATTCCGTTCATTCAAATTTGAAACAACATAAATGTGATTCATGTGATTACGTTACAAATAAGAAATCTGACCTTAAATCGCATATAGATTCCGTTCATTCAAATTTGACACGTCATAAATGTGATTCATGTGATTACTTTACAAATAAGAAATCTGACCTTCAATTGCACATAAATTCCGTTCATTCAATTTGA
Protein Sequence: MIDSQQEDCHLCEFSSKNKYELDYHIRIVHLKWKPYKCNKCDYTTKLVCSLQTHIDSVHSNLKKHKCHLCDYASNRTYDLKNHVNFVHLNSSPHKCQLCDFTSISKFNLKTHIDSVHINLKRYKCDSCDYATNYKHILKTHVNSVHLNSKPHKCHLCDVTYIRKFNLKLHIDSVHLNFKQHKCDSCDYATNKKSDLKLHIDSVHLNLKQHKCDSCDYAANKKSHLKSHIDFVHLNLKQHKCDSCDYATNKKSHLKSHIDSVHLNLKQHKCDSCDFATNKKSHLKSHIDSVHLNLKQHKCDSCDYATNNKSDLKSHIDSVHLNLKQHKCDSCDYATNKKSGLKLHIDSVHLNLKQHKCDSCDYATNKKFHLKLHIDSVHLNLKQYKCDSCDYSTNKKSGLKLHIDSVHSNLKQHKCDSCDYVTNKKSDLKSHIDSVHSNLTRHKCDSCDYFTNKKSDLQLHINSVHSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -