Haxy008087.1
Basic Information
- Insect
- Harmonia axyridis
- Gene Symbol
- Zfpm1
- Assembly
- None
- Location
- chr1:3052312-3061408[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.3 2.1e+02 3.2 0.1 2 23 6 27 6 27 0.93 2 15 0.73 65 4.8 3.0 1 23 455 478 455 478 0.93 3 15 0.96 86 4.4 0.1 2 23 560 582 559 582 0.94 4 15 0.00015 0.013 16.4 0.4 2 23 591 612 590 612 0.97 5 15 9.4e-05 0.0084 17.0 1.6 2 23 615 636 614 636 0.97 6 15 0.00065 0.058 14.4 0.6 1 23 642 664 642 664 0.98 7 15 2.4e-05 0.0022 18.9 5.5 2 23 671 692 670 693 0.95 8 15 0.77 69 4.7 3.2 5 23 706 724 703 724 0.96 9 15 1.9e-05 0.0017 19.2 2.8 3 23 731 752 730 752 0.97 10 15 0.0052 0.46 11.5 0.1 2 23 768 788 767 788 0.97 11 15 0.00034 0.03 15.3 1.2 1 20 794 813 794 816 0.92 12 15 0.00014 0.012 16.5 0.3 1 23 824 846 824 846 0.99 13 15 0.00041 0.036 15.0 4.0 1 23 852 874 852 874 0.98 14 15 7.7e-06 0.00068 20.4 3.3 1 23 880 902 880 902 0.98 15 15 0.00089 0.079 13.9 7.2 1 23 908 930 908 931 0.96
Sequence Information
- Coding Sequence
- ATGGAATCTAGCCCTGTCTGCCCTGTTTGTACCCTCTATTTGAGACCTGGCATTACTTTGAAATCTCATCTGAGCACCCATCCTAAGCAAAAAGTCATTGAGGCTCTGGTAAAATTGACTGAAGTCGAGCCACAACCTGGAGACAATAATACCGGCCAAGAATTGTGCCAAACAACTCAAGATCAGTCTTTTAATCCCGTAACAAATGCTCCATGGACAGGGGGAAATGTTCAGGGATCTTCTCAGGTCCAACCGCCTTTCCAAGGCAACCACGTCTTCATCTACCAACAGAGCATGAGCACATCACAAACCAACACTATCAATCCATTAGCCCCCCAACAGTACATTATACCAGCCGTTCTAAACCCCCAAACGATGCCCTACGTCTACCAACAACAGCAGGTGATAATGTCCAGCGGATCCTGCCTCCCCCAAATGCGAATCTCTCCCTTCGACCTGAACGGGGCGCCATCCACAGATGCCTCCACTTCAGTGATCCATTCCCCTGAAATAGTCAGAGAAGGCGAAGAAGAAGCAGGCCAAAGCGAAGAGATCGTAGACAACGTACAGCTGGACAACAGCTCTGAGGTTTCTATTAAGGATGACGAGATGGAGGAGGAGCCCTGTTCGAGTAAAGACTCCGGGGTCGATTCGAAAATGCAAGAAGACAACAGTTTTGCAGAGTCGAAGTTCGACCAAACCGACGAAGTTCCCGAAGAAACCTGGGAGGGTGGTTCGCAGGACTTGAACAAAGCTTGCCAAACTGCCTCAGCCCCCCAACCTGCAGACGATTTCACCAAGAAAGATTGCTACTACTACGACAACGAGACCGAGATCGGTTACGAGACCAATGTTGTCATGGACACGGCTTACGAGCAGCAGGGTCCCATTTACACCAGTGCCAACATATTGCAGGCGGGCGAAGACATTGATTTTGAAGTAGATGGGGTGCCCGTAATAATAGGGGAGTTCGCCAACAGTACAGTTATCTCTCAGGTGGACAATTTCGAGAATATCAGCGAAGGGAACGTGCTGATGACAATCGGAGAGAACGGGTTGGAAAATAATGGTTGTGTGGGTTTGGACATTATCGAGGAGAGCATGTCAAGGGGGAGCACGCAGGTGAACATACAGGCCGATGAGAGGATGCCCCCGAGAGGAGAGTTGTCGGGACAGGAGAGTTTGGGGGGCGCCAGCGATATCAACTGGAATAGGTTGCATTATAATGAAGTTAGTTCTAGCGCTTCCTACGACCCCCTGGGCAGGGATGCCTGGGAAGATTCAGACATAGACTGTCCCCCAGCCATGGAAGAAGACAACGACGTTCCTTCCGTCATCGGTTACACCCCTCCTAGTCTGAACTTCAAGTGTTCCAGTTGCGACGAGGCCTTCTCATGTCTCCAGGAAAGAAAGAAACACATCCAGGAGAAACATCCCCAACAGGAAGACAAACCGCAGCAACAACAACAACAACAACTCCAGCAACAGCAGCAGACGAGCACCAACGCGATAGGCTCCCTCATAGGCAAGAAGAAAGTGAAGAAACTCACCATCAAACCGAAGAGCGAGGCCGAACCAAAGTTAGACACAGTATTCACCAACAAAATAAAGATGGAGAGCTCGGAATGCAAGCCGGAAATGGAAGAGGTCAAGACAGACGATGGAGACGCTAGGACAGTTTGCGACTTGTGTAACACCGTCCTGCTGGATCAGAAGGCACTGAAAGAACACCGCGCCAAGGCGCACAAGATCCCCGACAAGGGCCGTCTAAAATGCTCCACTTGTGACGAGGTGTTCCCCAACGAGTACAAGTTTACGGAGCACCTGAAGGTGCATCCTCTGGAGTGCAAGATGTGCGGGAAGCTGTTCTACAGGAGGCAGAACATCCAGCTGCACATGAAACGCCATCTGGGGATCAAGCCGTACAAGTGTGAGGTTTGCGAGAAGGCCTTTTTGACTAAGCAGAAGTTGGAAGAGCACAGGAATGTGCATACAGGCCACGCCCCAATCAAGTGCAACCTTTGCAACGAGTCTTTTCGGAGACATTCCAATTTGATCCAGCACCGTAACAGGCACCATTTGAAACACAAACGGAAGTTCAAGGACTACGTTTGCCACTGCGGGGAGTATTTTCACTCGAGGAAGAAGCTGGCGTGGCACAAAGAAACGCACGACACGAAGCCGAAGGCCTGTACCAAGTGCAACGAGAAGTTTGTGCACATGTCCAGCCTGACTAGACACATGAGGAAGGCTCATAACGAAAGATTTCTGCCTTCCGAACAGAGGAGCAATGAGAATGTTCAGTGTCCAGTTTGTAAAGGTGTGTTCATAAAATCCTCGTTGGACGTGCACATGAGAACCCACACGGGTGCCAAACCGTTCTCCTGTCTCATCTGCAACAAGGACTTCAGCACCAGGTGGAACCTCAAGCTGCACAAGTGGACCCACGCCTCCAGGGTATCCAAGCCTTTCAAATGCGACCAGTGCAACGGGGCCTTCGTCAGAGAGTCCGACTACGTGTCTCACATGAACTCCCACAAGAGCATCAAGCCCTACACCTGCAACTATTGCGGGGCGCGTTTCATACGCAAGTACAACTGTCAACGGCACGTCAAGGAGCACGAGAACGTGAAGACCTTCAGTTGCACGGTGTGCGGTAAGCTGTTCCACAGATCGTACTATCTGAAGGACCACATGAGGGTGCACAGCGGGGTGAGGCCCTACACTTGTCACATCTGCGGGAAGACCTCCACCACCAAGTCCAACCACAACAAGCACGTGCAGATACATCATCCAAGATCTCCTGTGACCACGGAGGCTTAG
- Protein Sequence
- MESSPVCPVCTLYLRPGITLKSHLSTHPKQKVIEALVKLTEVEPQPGDNNTGQELCQTTQDQSFNPVTNAPWTGGNVQGSSQVQPPFQGNHVFIYQQSMSTSQTNTINPLAPQQYIIPAVLNPQTMPYVYQQQQVIMSSGSCLPQMRISPFDLNGAPSTDASTSVIHSPEIVREGEEEAGQSEEIVDNVQLDNSSEVSIKDDEMEEEPCSSKDSGVDSKMQEDNSFAESKFDQTDEVPEETWEGGSQDLNKACQTASAPQPADDFTKKDCYYYDNETEIGYETNVVMDTAYEQQGPIYTSANILQAGEDIDFEVDGVPVIIGEFANSTVISQVDNFENISEGNVLMTIGENGLENNGCVGLDIIEESMSRGSTQVNIQADERMPPRGELSGQESLGGASDINWNRLHYNEVSSSASYDPLGRDAWEDSDIDCPPAMEEDNDVPSVIGYTPPSLNFKCSSCDEAFSCLQERKKHIQEKHPQQEDKPQQQQQQQLQQQQQTSTNAIGSLIGKKKVKKLTIKPKSEAEPKLDTVFTNKIKMESSECKPEMEEVKTDDGDARTVCDLCNTVLLDQKALKEHRAKAHKIPDKGRLKCSTCDEVFPNEYKFTEHLKVHPLECKMCGKLFYRRQNIQLHMKRHLGIKPYKCEVCEKAFLTKQKLEEHRNVHTGHAPIKCNLCNESFRRHSNLIQHRNRHHLKHKRKFKDYVCHCGEYFHSRKKLAWHKETHDTKPKACTKCNEKFVHMSSLTRHMRKAHNERFLPSEQRSNENVQCPVCKGVFIKSSLDVHMRTHTGAKPFSCLICNKDFSTRWNLKLHKWTHASRVSKPFKCDQCNGAFVRESDYVSHMNSHKSIKPYTCNYCGARFIRKYNCQRHVKEHENVKTFSCTVCGKLFHRSYYLKDHMRVHSGVRPYTCHICGKTSTTKSNHNKHVQIHHPRSPVTTEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00349454;
- 90% Identity
- -
- 80% Identity
- -