Haxy004069.1
Basic Information
- Insect
- Harmonia axyridis
- Gene Symbol
- -
- Assembly
- None
- Location
- original:2142-8450[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.028 2.5 9.2 4.7 1 23 75 98 75 98 0.95 2 23 0.0099 0.88 10.7 3.6 1 23 104 127 104 127 0.95 3 23 0.14 12 7.0 1.0 1 23 133 156 133 156 0.92 4 23 0.083 7.4 7.7 1.7 1 23 162 185 162 185 0.92 5 23 0.00097 0.086 13.8 1.8 1 23 191 214 191 214 0.95 6 23 0.0015 0.13 13.2 3.8 1 23 220 243 220 243 0.97 7 23 0.038 3.4 8.8 1.2 1 23 249 272 249 272 0.96 8 23 0.00047 0.042 14.8 1.9 1 23 278 301 278 301 0.93 9 23 0.001 0.093 13.7 1.8 1 23 307 330 307 330 0.97 10 23 9.1e-05 0.0081 17.1 1.1 1 23 336 359 336 359 0.96 11 23 0.0056 0.5 11.4 2.3 1 23 365 388 365 388 0.92 12 23 0.29 26 6.0 6.4 1 23 394 417 394 417 0.96 13 23 0.023 2.1 9.5 2.3 1 23 423 446 423 446 0.95 14 23 0.0058 0.52 11.4 3.6 1 23 551 574 551 574 0.96 15 23 0.0027 0.24 12.4 2.2 1 23 580 603 580 603 0.97 16 23 0.03 2.7 9.1 1.1 1 23 609 632 609 632 0.95 17 23 0.00042 0.037 15.0 1.4 1 23 638 661 638 661 0.95 18 23 0.00017 0.015 16.2 1.4 1 23 667 690 667 690 0.97 19 23 0.0035 0.31 12.1 4.7 1 23 696 719 696 719 0.96 20 23 0.1 8.9 7.5 3.5 1 23 725 748 725 748 0.96 21 23 0.1 9.1 7.5 1.4 1 23 754 777 754 777 0.97 22 23 0.0013 0.11 13.5 3.7 1 23 783 806 783 806 0.95 23 23 0.0035 0.31 12.1 1.0 3 23 814 835 813 835 0.95
Sequence Information
- Coding Sequence
- ATGAATGCGGAATCAAATGAAATAGATGAAACTGTTGAGTGTTCAGAGATTGAAGAGAACTTCAGGTCTCAATTGAAAAAAAATGAAGATATTTCCAAACAATTCATTGATGAGAATGAAGTTCATGAGAGGATTGTAGACTTGGAAAATGATGATGATTCTTCGAATATAAAAGAATCACCCAAATTATGTGATGAATCTTCTTATTCAAATACGAAGAAACATCACTGCCGCCTGTGTGATTATGCTACAAAACAAAAAAGAACGCTCAAACAACATGTAAATTCTGTTCATATAAATTTGAGGGAACATGAGTGTCACCTGTGTGATTATGCGACCAATCAGAAAGCTTGTCTCAAACTACATATAGATTCAGTTCATTTCAATTTGAAGGAACATAAGTGTCACCTGTGTGACTATGCTGCAAATCAGAAAGTGTTTGTCAAACAACATATTGCAGCTGTTCATTACAATTTGAAGGAACATAAGTGTCACCTGTGCGATTATGCTTCAAACTATAAAAATTTAATCAAACAACATATTGCAGCTGTTCATTACAAATTGAAGAAACATGTATGTGATATGTGTGATTTTGCTACTAACAGAAAAGTGCATCTCAAACAACATATAGATTCTGTTCATTTGAAATTGAAGAAACATAAGTGTCACCTCTGTGATTATGCTGCAAACCATAAAGGCAATCTCATGAAACATGTAAATTCAGTTCATTTAAATTTGAAGGAACATAAGTGTTACATGTGTGATTATGCTACAAATATTAAACAATTACTAAAACAACATATAGATTCAGTTCATTTGAAATTGAAAGGACATAAATGCCACCTGTGTGATTATGCTGCAAATCAGAAACAGAATCTCAAAAGACATATTGATGCTGTTCATTTAAATTTGAAGACACATAAGTGTCATCTATGTGATTATGCTGTAAATCGTAAAGAAATGCTTGACCAACATATAAATTCAGCTCATTTAAATTTGAAGCAATATAAGTGTCACATGTGTGATTATGCTACAAATCAGAAAGCTAGTCTCAAATTACATATAGATTCAGTACATTTCAATTTGAAGGAACATAAGTGCCACCTGTGTGACTATGCTACAAATCAGAAAGTTTTTCTCAAACAACATATTGATGCTGTTCATTTCAATTTGAAGAAACATAAGTGTCACCTGTGTGATTTTGCTACAAACTATAAATATTCAATCAAACAACATATAAATCATGTTCATTTACATTTGAAGGAACATAAGTGTCACACTTGTGATTATGCTACAAATAATAAACAATTAATCGAACAACATATAGATTCAGTTCATGTAAATCTCAATCATGTAAATTCTAATGATTCAGATATGGGGCAACATGTGTTAACCGAAAATTCAAAACATGAAGATTCGATTCATTTCAATGAGCATGATTATGCCGAAAATCAGAACATGGATTTCAAGAATCATTCGGCAAAAATAGAAGATATTGCCAAACAATTCATTGATGATATTGGAATTCATGAGAGGACAGTATACTTAGAAAATATTAATGGAAATGACTTGAGTCACAAAGATGTTCATGATGGTTCTTCAAAAACATTAGAACCACCCCAACATATACTTCACTCAAATTTGAAGGAACATAAATGCCATCTGTGTGATTATGTTGCAAATTCGAAAATATTACTTAAGCGGCATATATATTCATTTCATTTAAAACTAAAACAACATAAGTGTGACCTGTGTGATTTTGCATCACATCGAAAAGTAAATCTCCAAGAACATATAAATTCAGTCCATTTAAAGTTAAAGGAACATAAGTGTCTCCTGTGTGATTATGCTGCAAATAGGAGAACCACTCTCAAATATCATATAGATTCAGTTCATTTAAATTTGAAGGAACATGAATGTAACCTATGTGATTATGCCACGAATCAGAAAGCTCATCTCAAAGAACATATAGATTCAGTTCATTTGAATTTAAAAAAACATAAGTGTAACTTATGTGATTATGCTACAAATAACAAAACTGATCTAAAACTACATATAAATTCTGTTCATTTAAAATTGAAAGAACATAAGTGTCACTTGTGCGATTTCGCTACAAATTATAAAAAATTACTAAAACGACATATAAGTTCAGTTCATTTAAAACTGAAACAACATAAGTGTCACCTGTGTGATTATGACGCGAATCTGAAAAAAACCCTGAAACAACATATAAGCTCAGTCCATTTCAATTTGAAGGAATATAAGTGTCACCTGTGCGAATATGAGGGAAATCTTAAAAAGTATCTTGATCAACATATTAATTCTGTTCATTCGAATTTGAAGGAACATGAGTGTCACCTGTGTGACTATGCTACATATCAGAAAAGATATCTCAAAAAACATATAAATGAAGTTCATTTAAAATTGAAACAAAATAATTGTCACATGTGTGATTATGCTTCAAATAATAAAACCACTCTCGAACAGCATATAGATTCAGTACATTTAAAGGAACATTAG
- Protein Sequence
- MNAESNEIDETVECSEIEENFRSQLKKNEDISKQFIDENEVHERIVDLENDDDSSNIKESPKLCDESSYSNTKKHHCRLCDYATKQKRTLKQHVNSVHINLREHECHLCDYATNQKACLKLHIDSVHFNLKEHKCHLCDYAANQKVFVKQHIAAVHYNLKEHKCHLCDYASNYKNLIKQHIAAVHYKLKKHVCDMCDFATNRKVHLKQHIDSVHLKLKKHKCHLCDYAANHKGNLMKHVNSVHLNLKEHKCYMCDYATNIKQLLKQHIDSVHLKLKGHKCHLCDYAANQKQNLKRHIDAVHLNLKTHKCHLCDYAVNRKEMLDQHINSAHLNLKQYKCHMCDYATNQKASLKLHIDSVHFNLKEHKCHLCDYATNQKVFLKQHIDAVHFNLKKHKCHLCDFATNYKYSIKQHINHVHLHLKEHKCHTCDYATNNKQLIEQHIDSVHVNLNHVNSNDSDMGQHVLTENSKHEDSIHFNEHDYAENQNMDFKNHSAKIEDIAKQFIDDIGIHERTVYLENINGNDLSHKDVHDGSSKTLEPPQHILHSNLKEHKCHLCDYVANSKILLKRHIYSFHLKLKQHKCDLCDFASHRKVNLQEHINSVHLKLKEHKCLLCDYAANRRTTLKYHIDSVHLNLKEHECNLCDYATNQKAHLKEHIDSVHLNLKKHKCNLCDYATNNKTDLKLHINSVHLKLKEHKCHLCDFATNYKKLLKRHISSVHLKLKQHKCHLCDYDANLKKTLKQHISSVHFNLKEYKCHLCEYEGNLKKYLDQHINSVHSNLKEHECHLCDYATYQKRYLKKHINEVHLKLKQNNCHMCDYASNNKTTLEQHIDSVHLKEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -