Haxy005273.1
Basic Information
- Insect
- Harmonia axyridis
- Gene Symbol
- Gxylt1
- Assembly
- None
- Location
- chr5:10493699-10527576[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.018 1.6 9.8 0.1 1 21 562 582 562 586 0.89 2 14 0.27 24 6.1 1.4 2 19 590 607 590 609 0.96 3 14 0.056 5 8.3 4.1 1 23 619 641 619 641 0.98 4 14 0.59 53 5.1 0.1 3 21 659 677 659 678 0.95 5 14 0.4 35 5.6 1.2 2 23 685 706 684 706 0.96 6 14 0.0002 0.018 16.0 0.4 3 23 714 734 712 734 0.98 7 14 0.0017 0.15 13.1 0.4 1 23 741 763 741 763 0.97 8 14 2e-05 0.0018 19.1 5.6 1 23 772 795 772 795 0.95 9 14 0.019 1.7 9.8 1.1 1 23 809 832 809 832 0.96 10 14 1.7e-05 0.0015 19.3 0.7 1 23 839 861 839 861 0.98 11 14 2.8e-06 0.00025 21.8 0.3 1 23 867 889 867 889 0.97 12 14 1.5e-05 0.0014 19.5 5.9 1 23 895 918 895 918 0.97 13 14 1.9e-06 0.00017 22.4 1.4 1 23 924 946 924 946 0.99 14 14 6.4e-05 0.0057 17.5 1.1 1 23 953 975 953 975 0.98
Sequence Information
- Coding Sequence
- ATGAGAATAAAAAAGAGCGATCAACTAAAGTTAAAAACTTTTCTGAAACTATTTTTCCTTTGCCTAGCTGTGTTCATTTTGTTATTCCTGTATTTAATTTGGAACCTTAGTCCTATAACTGAAAATATAGTCACTGAGCCTGTTGTCTTCAAAAGACACGATGTTGTTGTTGCTGTTGTTGCCTGTGGTGACCGCTTCGAAGAAACAATGACAATGTTAAAATCAGCACTAATGTTTACAACAATTCATATAAATTTTTTGGTTGTCTCAGATGATAAATTAATCGATAGATTTAAAGAAAAGTTAGGACAATGGAAAACTCTAACTAAAAATCGTTTCAGCTACAAAGTATTACCTTTAACATTTCCAGTTGATGAAGCTGAGGAATGGAAAAAATTATTCAAATTGTGTGCATCTCAGAGACTGTTTTTACCAGAACTCTTGAAAGATGTTGATTCCCTTTTATATATGGACACTGATACTTTGTTCCTTACACCTGTTGAAGATGTTTGGGATCATTTTTATAAAATGAATTCTAGTCAAATGGCAGCTCTGGCTCCTGAACATGAAGAGCCTAATGTAGCTTGGTACAATAGATTTGCTAAGCACCCTTATTATGGAAAATTAGGAGTAAATTCAGGAGTTATGCTTATGAATTTAACAAAAATGAGAGCATTTCGATGGAGTGAATATGTAGTTCCAATTTATAAAAAGTTCAAACTAAAAATTACATGGGGCGATCAAGACATAATAAATATCATATTCCATTATCATCCAGGAAAATTATACATTTACCCTTGTCGATATAACTTTCGACCAGATCATTGCATGTACAACAGTGTGTGTAAATCGGCAGAAAAAAAAGGAGTTGCAGTACTGCATGGTTCAAGAGGATTTTTCCATTCCGACAAACAACCTGTATTCAAAGCAATATATCAAGCTGTAGAAGAGTTCAACTTGGGTACTGATTCTAAACAAATCTTTCTTCAGAGTGTTGAGACTTACTTGGAAGAAAAAAAAAATACTAACTGTGGACATATTACAAAGAATGACATATTTCCAAAAAATATATGTCAGACTTGCTTACAAAGCCTGATAGCTGCATATATATTCAAGGACAAGGTGGTGAAAACTCAACAAGCCCTCGCATCAATAGCAAGAGTTGTTGATAGGGTTAAAACAAAAAAGAATGGAAATGTTTCTAAAGATCATACTTACCATCATGATAAGAAACAAATAACTCCTCAGCAGCTGAGTGAACATATAGAACAGCAACTACCAGAAATGGGGCACGTTAAAGTGGAAATCGAAAACCAGGATGATGAATATTTATCTCAGATGGTTCAGCATCAGATTCAAAATGGAGGTATGGAAGTGGAATATATAAAGCAGAATGGAGATGGTGAAGAACAAGAATATTGGTTGCAAGAGGTTCCCGAAGGTGAAGGGGATACTCTTGATGATCCAAATACAGTACAAAATTATGAAGATATGAATAATATTTTGAATACAGTGAAAGTTTTGAATCCCGTACAATTTCCCGATGGTGCTGCTGCTGCTGCTTATGTGGAGGGACATGTTCAAGAGGGAGATGGTGAAGAATACCAAACTATAGAGTTTATCGATGGAGATGTGAATTACGTTGATGGGCAATTTATCGAACAAAAGCCAAGGGAGAAAATCCATATCTGTCGTGTGTGCAATGAAGGTTATGCTACCTCCAGGGAACTGAATGCTCATGCTCAAGAAGCTGATCATCCGCAAAGGTCCTGTACAACCTGTTATGAAGCCTTTCACAGCTACTCAGCTTTGATTCGCCACTGTATGGATACTAAACATTCCCGCCCTCCTATGTTCAAGTGCCCATATTGTTTCAAGAAGTGTGACAACAAACTAATTTTGCAAAGTCATATAAAAAATCATTTGAAGACCAGAAATATCAGAGTTACCAAGGATAAAAGGGGTAACCTTGGATGCCAGGTTTGCCGCACTGCCTTCGTAAGTGTTTTGGATCTAAGACAACATTACAAGGATAACAAAGAAAGTCATTTGACATGCCATATTTGTCTTGAAAGAATGGAAGACTTTGAAAATTTCGAGTTACATATGAAACAACATGAAAATGAGAAACCGTTTGGATGCGAGATATGTGGAGCCAGGTTCAACTTGCAGGTTAATTTTGAGCGCCATCTCAAAAAACATACTCAGACCGACACCCTTTATAAGTGTCGGTTCTGCCCAAAAGTTTTTGCTAATGAAATGTCGGTGGAACAGCACGAGAAGCTTCATGAAGTCATAGATCCAACTAGAACACACCATTGCCATGAGTGTGGTAAAGTATTTACTACTGCAGGATTTTTGAAGAAGCATATTGAGCGTTTCCATCTTGGTCTGATGAATTACAACAAGAGCCCCAGAGTACCTTTTGAATGCGAGCTTTGCGGAAAAGTTCTTTCCTGCAAAGCAACCCTCTACAGTCATCTGAAGAATGTTCATGATAAAAATCAAAAATCTTTCACTTGTGAAATTTGCGGAAAAGTCCTGAAAACCAAAACTTCTTTGGAATTGCACACAAACTATCATAATGGAAATTGTCCATTCAAGTGTGGTATTTGCGGAAAAGCTTTTACAAACGCCACAACTCTAAAGAGTCACTCTTTAATCCACACAAACGAGAGGCCCCATGAATGCCAAGTCTGTCACAAGACATTCAAGCAAAAGCCGCATCTCACCACTCACATTCTCACCATTCATACAGCTCTTAAAATGTTCAAATGTGATTACTGCGAGAAAACCTTTGCTCTGAAAGGTAACTTGTCTCAACATTTGAAGACGCATACTGGTTGTGAATCCCCATTTGTCTGTACCGTTTGTAACAAAGCTTTTTACTTCGCAAGCAGATTAAGAAAACACGAAAAAATCCACATGAAACCGTAA
- Protein Sequence
- MRIKKSDQLKLKTFLKLFFLCLAVFILLFLYLIWNLSPITENIVTEPVVFKRHDVVVAVVACGDRFEETMTMLKSALMFTTIHINFLVVSDDKLIDRFKEKLGQWKTLTKNRFSYKVLPLTFPVDEAEEWKKLFKLCASQRLFLPELLKDVDSLLYMDTDTLFLTPVEDVWDHFYKMNSSQMAALAPEHEEPNVAWYNRFAKHPYYGKLGVNSGVMLMNLTKMRAFRWSEYVVPIYKKFKLKITWGDQDIINIIFHYHPGKLYIYPCRYNFRPDHCMYNSVCKSAEKKGVAVLHGSRGFFHSDKQPVFKAIYQAVEEFNLGTDSKQIFLQSVETYLEEKKNTNCGHITKNDIFPKNICQTCLQSLIAAYIFKDKVVKTQQALASIARVVDRVKTKKNGNVSKDHTYHHDKKQITPQQLSEHIEQQLPEMGHVKVEIENQDDEYLSQMVQHQIQNGGMEVEYIKQNGDGEEQEYWLQEVPEGEGDTLDDPNTVQNYEDMNNILNTVKVLNPVQFPDGAAAAAYVEGHVQEGDGEEYQTIEFIDGDVNYVDGQFIEQKPREKIHICRVCNEGYATSRELNAHAQEADHPQRSCTTCYEAFHSYSALIRHCMDTKHSRPPMFKCPYCFKKCDNKLILQSHIKNHLKTRNIRVTKDKRGNLGCQVCRTAFVSVLDLRQHYKDNKESHLTCHICLERMEDFENFELHMKQHENEKPFGCEICGARFNLQVNFERHLKKHTQTDTLYKCRFCPKVFANEMSVEQHEKLHEVIDPTRTHHCHECGKVFTTAGFLKKHIERFHLGLMNYNKSPRVPFECELCGKVLSCKATLYSHLKNVHDKNQKSFTCEICGKVLKTKTSLELHTNYHNGNCPFKCGICGKAFTNATTLKSHSLIHTNERPHECQVCHKTFKQKPHLTTHILTIHTALKMFKCDYCEKTFALKGNLSQHLKTHTGCESPFVCTVCNKAFYFASRLRKHEKIHMKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -