Haxy008627.1
Basic Information
- Insect
- Harmonia axyridis
- Gene Symbol
- PRDM7
- Assembly
- None
- Location
- chr1:2028084-2046994[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.011 1 10.4 0.4 2 21 700 719 699 720 0.94 2 22 0.00019 0.017 16.1 0.6 2 23 740 761 739 761 0.97 3 22 0.00017 0.015 16.2 2.0 2 23 768 789 767 789 0.96 4 22 0.2 18 6.5 0.6 1 23 828 851 828 851 0.96 5 22 0.0015 0.13 13.2 2.0 1 23 857 879 857 879 0.98 6 22 0.015 1.3 10.1 2.2 1 23 885 908 885 908 0.95 7 22 0.0043 0.39 11.8 2.1 1 23 914 937 914 937 0.97 8 22 0.0044 0.39 11.8 0.2 1 23 943 966 943 966 0.95 9 22 0.038 3.4 8.8 4.9 3 20 1195 1212 1194 1214 0.94 10 22 0.18 16 6.7 0.2 1 21 1230 1250 1230 1251 0.94 11 22 0.00042 0.037 15.0 6.2 1 23 1274 1296 1274 1296 0.98 12 22 0.00094 0.084 13.9 5.0 1 23 1304 1326 1304 1326 0.99 13 22 0.00015 0.013 16.4 1.9 1 23 1332 1355 1332 1355 0.96 14 22 0.0018 0.16 12.9 0.7 1 23 1395 1417 1395 1417 0.99 15 22 0.00018 0.016 16.1 0.3 1 23 1477 1500 1477 1500 0.98 16 22 0.0017 0.15 13.1 0.9 1 23 1506 1529 1506 1529 0.97 17 22 0.00088 0.079 14.0 3.2 2 23 1536 1558 1535 1558 0.95 18 22 0.0017 0.15 13.1 0.8 1 23 1564 1587 1564 1587 0.97 19 22 0.0014 0.12 13.3 1.0 1 23 1593 1616 1593 1616 0.97 20 22 0.0086 0.76 10.8 3.9 1 23 1622 1645 1622 1645 0.96 21 22 0.0053 0.47 11.5 3.9 1 23 1651 1674 1651 1674 0.95 22 22 0.048 4.3 8.5 4.2 1 23 1680 1703 1680 1703 0.97
Sequence Information
- Coding Sequence
- ATGGATATGAACCAAGATAACTATTTTTCCTATCTCAATTTGAAGAAATCAGGCTCATCTTCTACTTTGGATGAGAAATGTCAAGAGGAAGTGATTACTGTTAGAAGAACTAGAAGAGTTCTATATAAGTATACCGAGAACAACGGCAATAAGCAAAAAGGTGGTAGTGTTGGTAATAAATCTGAAGTCGAAGAAAAAATATCATGCAGAAAGAAAAAGCAATTGCTTAATATTTCCATACCGCCAAATAATGAGATGGAAAAGAACCCAAATAACTTCGAAAAGACAAATTTAAATACTAGAAAGTTTGAGGAGCTTGAAGAGCAGGAATTAAGTGGATATATTACAGAAACATCAGAAAAAGAATATTTCAATGGTTTCTCAAATTCAGATAGGAGGCAAGAAAATTCAAATTGCAATCCGTTATCTGAAACAGAGGTATTTCTTGAATCATTGAAATTGAAGAAAATTGATATTTCTCCTGATAAAAAGCAAGCAGTCAAAAGACCTTTGAGAGAACCAGTTCAACATATTCTAGACGAAGTGTATAAATACACTGATTGTAAGAACATTCCATGTAAGAAAAGAAAAATTGTTCAAGGTTTCTTAAGCCCAACTGTTGACAAAACAACATCTGAATTCAGTAAAAATCTGAAAGAAAAAGGATTCCTGAATGAAGAATTTAAAGTTGAAATAGGAAAAGTTTCAAATGACTATATACCAAGAATAAGTGAGAACAGTTATGCCACAATGAATTTAATGCATACTCCTGAAATAACACTCTCTAATATTTCTCCACTTAGGACTGATCTTGACGGTGAGGCAGAATTAATAGAGGCAAGCGAAAATTTACATCTCTATATCCCAAAACCTAATAACTCACTAGAAGATGCAATGTTCATACAACAAATAAATGAAAAAACAATTGAACCAAATTCTACTACCCAAGATTCACATTCTAACAAAAATGAGGAATTGTCAAAAGCAGTCGAAAAATGTAATGGTAAAATTGCTACAATAACGAATTTCTGGAAAAATTTGATGCACTATGAGAAAAATATAAAAGATCTAACTGCAGAAATATGTAAACCATTTGTTTCAGATTTAGCAACGCAATGTGACGCTACATCAGTTATTGAACCAAAAGTTGAACTTGTAACAAATGTTGATGATGAAGATTCTACTAGAATAATTATAGAATCGAATGAAGTTCATGCGACAAAACAAAATGAGTGTATTGGAGCTATTTTAGAGCCATTTATAGAAGTGAAAGTTGAAGATAAATGTCCAGAAAATGATTGTGCACTAGAAAAATCATTAGGAACTCAATCTTTACAGCTTATAAACAATGAAGATGTGATACCGAAGGAAAATGAAGAAGAGACAAAAAATGAGCAAGAGGCAGAGGTTTATCAGAAGGAAGTTGAAAAGTCACCTGAAGAAGAAAAAAAAAGTGAGGTTTCCCCGAGAAAAACAAGTTGTTCTTTAGAGCATGTAAGTCATACTTTGACAAATAAAGAACAATCTCATCCAAATATAGATGAAATGAAGAGCAAGCTTTCTACAACTAGAAAAAGATACAATATTCTGAAGGAAAATATTTTGAAGAAAATCAAGTCTTTTTCAAATTTAAAAATTTCAAAGAAGAATGGAAGTTCTACGAAAATAAGAACAGAAGAACCAGCGAATTATGAAAATCGATCTTTAATTAACCCTTTAAGAATTGTTGATGCAGAGTTGATAGCAAACAATAACTTGCAAATAAAACAAGAATTAATAAATTTTTCAGAGCAAGAACAACCAGTAACAGATAATCCTTTTGAAATGGAATGCCGGGATTGTCCCACTCCAATGATAATAAGGATAGATAAACCATCATACAATCAGATATCACAAAATGAAGAATTACAAATAAATGATCTCCTTTTCACAATTAGAAACCTTTCAGAGTCTGTACAGAAAGAAGTAGAATCATGTAATGATTGCCAAATCTTGGAAGTAAAAGATGAATTCGAACCAGATAAAGAGCCAATCCAGTTTGAGGCCATCCATTATGATAAAACGCCAAACCTGTACCTAGGCATCCACATTAGGAAATACTGTAATTTCTGCAATGTTGGATACATCAATGAATATTCTCTCAAAAAGCATATGCTTCGTTCTCCTTATCTACCGACAGAAGGCACCAAGAAACACAGCCCAAAAAAACCAAGTTTAGAGTGTCCTCTTTGCGACTACACCTCGTCCAATGCCGGTCACATGACAGTCCACCGAAGAACACATGATAATGTGCCTCTGTGTGTTTGTGATATTTGTCTGAAAGGGTTCAGTAGATTTGATGCGCTACAAAGGCACATGTTCAAACACATGGATTTTGCGGAGGACGTGGAAGAGGTAGAAAAGGATTTTGTGTGTAACGGGGGAGCGTTGAGGACTACCCTCAAAGTGAAAATAAGGAATAAGCCCTTTACGATCCTGAAATACCAGTGTTTAGAGTGTAAATACGCGACAACTGTTCGAGTTAGCATGGAACAACACTTCAACTCGATGCATTTGAACATCGTTAGCTTCAAGTGCAGCATGTGTCCTTTCACCACTAAATTGAAGACGAATTTGAAGCAGCACTTGAATTGGCATTTGAGAGAAAAAGTTTACAGGTGTTCCCATTGTCCTTACGAAACAATTAATAAAAGTTACATTAAAAAGCATGAGAATCAGGTTCACCTTAAGGCCATTTCGTACGAATGTAATTTCTGTGTTTTTAAAACTTATCGCAAGGAAAATCTTAAAACTCACATAAACAGTATGCATTTAAAGGCAAAGAAATTTTCTTGTGACGAGTGCAATTATTTTTCTTATGTACAGTCCAATCTGATCGCTCATGTTAAAGGAATCCATCAAGTTAAAGCCGCTGCTACCACGAAAAACGACAAAGACGTCGAATTCAAATTGAAAAAAGCTATTGTAGAAAATTCAGAAGTCCGTCGAAATCCTAGAAGGCAAGTAGGCGAGAAAAATTACGAAGAGCTTGAAGAGCCGAAGGATGATCGATATGTCTATTGCGACTTTTGCGACGAAGTATTCGTGGACAACTGCGCCAAATGCGGCCAGTTGTGTTACTTACGAGACGAAGAAGTTCCAATGGGAACGGAGAATAGGGCCAAGCTTACGGTACCGAAAAATACTCTGGTTGTTCATCCTTCTCCAATTCACGGTTTCGGAGTTTTTGCCAAGACGCCCTTAAAGAAAGGGATGAAGATGGGACCGTACGAGGGTAAAATAACGAAGGTGGAAAGCACAGCCGGGTACAGCTGGAAGCTGAGCGATGGCAGACTGGTAGATGCTGCTGATGAGAAATTCTCCAATTGGATGAGATTCATAAACTGTGCTCGTCATTTCGAAGAACAGAACGTGGTCGCCTTCCAATACAGAAGTAACCTGTACTACAGGACTTGCAGGGATATACAGCCCGGTCAAGAACTCCTTGTATACTACGGTCATAGCTTCGCTCAAAACCTAGGAATAGACGTGAGGAAATACTTCGAGCCTAAGGAAGAACAAATGTCACAAAATCCAGAGTGTTGTCCTCACTGCAACTATTGTTACAAGGATCTAACGAAGTTGAAGAATCACTTGGCTTTGTGCAAATGGAATCCTGAAAATTTTAAGAAGCTTCCGGAGAAGATTTATTATTGCAAGTTTTGTCCAGTGGCCACTGGAGATGAGGAATATCTCAAGAGACATGAGAAGAGGTGTGAAAAAGAAAAGGAGAATAATAAAATGAACACTGACGTAGCTGATGAGGCAGAAAAGAAAAAATTCCAATGTCAACACTGCAAATATTCTACGAATGACAGAAGTCATTTGAAAAGACACGAAATGGTTCACAATACTGACTGTGAGAAAAAATTCAAATGTGAGGAATGTCAATATTCTACTAAATTGAGATATCACTTGAATAGGCATAAAAGAATTCATGGAAGAACGTTTTCATTTAGTTGCAGACTATGCCAGAAAGGTTTCAATCGTAAGAGTGGTTTGAGTAATCATATGTACAGCAATCATTTGAATTCGGCAGAGAAAAAAACCGTGTTGGATACTTTAGAAATTTATGACAATAAGGCTGAAAAAAATAAAATCGAAGCAGAATTTACTGATGGTTCAAAAATGAAATTTGTAGAATATAAATGTCAACAATGTACGTTTGTAACCATAAAAGAAGGAGATTTGAAACGCCACCTTAACATCCATAGAAAAAAACTGATGTTCTCTTGTATCTTTTCTTGTGAATTCATGTCTCCTGAATTAGATGAAATTCGGTATCATTTAAAGAACAATTGTGAAGGGAATACATCGGAGTGTGACATATGTGAAAAAGGTGCATTTTGTGAAATGCACATCAAAAAGAGTTACAAAAATGAGGAAGGTTACACTTGTGGCATTTGTAGCAATATTTTTTCTCAAAGAAATAGTCTCAAAATCCATATTTCAACAGTACATTTAGGAGAAAAAAACTACAAGTGTCAACTGTGTGACTATTCTGCGAACGAAAAAAGAACTCTCAAAAGACATATCTCATCAGTACATTTAGGAGAAAAAAACTGCAAGTGTCAACTGTGTGACTATTCAACAAACCGAAAAGGAACTCTCAAAAAACATATCTCATCAGTACATTTAGGAGAAAAAAAGTACAAGTGTGAATTGTGTGACTATTCTGCAAACCACAAAATAAGTCTCAAAATTCATATTTCATCAGTACATTCAAAAGACAAAAACTACAAGTGTGAATTGTGTGACTATTCTGCAAACCGAAAAGCGCATGTCAAAAATCATATTTCATCAGTACATTTAGGAGAGAAATACCACAAGTGTCAATTGTGTGACTATTCCGCAAACCATAGAAGAAATCTCCAAAAGCATGTTTCTTCAGTACATTTGGAAGAAAAAAACCACAAGTGTCAATTCTGTGACCATTCTACTAACCGAAAGGAAGATCTCGAAAGTCATATAAACGGCAAACATTTGAATACAAATAAGTATAACTGTGATTTTTGTGATTATTTCTCATTTTACAGAAACCAATTGAGGAAACATATTAAAAAACGACATGTGAACATTTAA
- Protein Sequence
- MDMNQDNYFSYLNLKKSGSSSTLDEKCQEEVITVRRTRRVLYKYTENNGNKQKGGSVGNKSEVEEKISCRKKKQLLNISIPPNNEMEKNPNNFEKTNLNTRKFEELEEQELSGYITETSEKEYFNGFSNSDRRQENSNCNPLSETEVFLESLKLKKIDISPDKKQAVKRPLREPVQHILDEVYKYTDCKNIPCKKRKIVQGFLSPTVDKTTSEFSKNLKEKGFLNEEFKVEIGKVSNDYIPRISENSYATMNLMHTPEITLSNISPLRTDLDGEAELIEASENLHLYIPKPNNSLEDAMFIQQINEKTIEPNSTTQDSHSNKNEELSKAVEKCNGKIATITNFWKNLMHYEKNIKDLTAEICKPFVSDLATQCDATSVIEPKVELVTNVDDEDSTRIIIESNEVHATKQNECIGAILEPFIEVKVEDKCPENDCALEKSLGTQSLQLINNEDVIPKENEEETKNEQEAEVYQKEVEKSPEEEKKSEVSPRKTSCSLEHVSHTLTNKEQSHPNIDEMKSKLSTTRKRYNILKENILKKIKSFSNLKISKKNGSSTKIRTEEPANYENRSLINPLRIVDAELIANNNLQIKQELINFSEQEQPVTDNPFEMECRDCPTPMIIRIDKPSYNQISQNEELQINDLLFTIRNLSESVQKEVESCNDCQILEVKDEFEPDKEPIQFEAIHYDKTPNLYLGIHIRKYCNFCNVGYINEYSLKKHMLRSPYLPTEGTKKHSPKKPSLECPLCDYTSSNAGHMTVHRRTHDNVPLCVCDICLKGFSRFDALQRHMFKHMDFAEDVEEVEKDFVCNGGALRTTLKVKIRNKPFTILKYQCLECKYATTVRVSMEQHFNSMHLNIVSFKCSMCPFTTKLKTNLKQHLNWHLREKVYRCSHCPYETINKSYIKKHENQVHLKAISYECNFCVFKTYRKENLKTHINSMHLKAKKFSCDECNYFSYVQSNLIAHVKGIHQVKAAATTKNDKDVEFKLKKAIVENSEVRRNPRRQVGEKNYEELEEPKDDRYVYCDFCDEVFVDNCAKCGQLCYLRDEEVPMGTENRAKLTVPKNTLVVHPSPIHGFGVFAKTPLKKGMKMGPYEGKITKVESTAGYSWKLSDGRLVDAADEKFSNWMRFINCARHFEEQNVVAFQYRSNLYYRTCRDIQPGQELLVYYGHSFAQNLGIDVRKYFEPKEEQMSQNPECCPHCNYCYKDLTKLKNHLALCKWNPENFKKLPEKIYYCKFCPVATGDEEYLKRHEKRCEKEKENNKMNTDVADEAEKKKFQCQHCKYSTNDRSHLKRHEMVHNTDCEKKFKCEECQYSTKLRYHLNRHKRIHGRTFSFSCRLCQKGFNRKSGLSNHMYSNHLNSAEKKTVLDTLEIYDNKAEKNKIEAEFTDGSKMKFVEYKCQQCTFVTIKEGDLKRHLNIHRKKLMFSCIFSCEFMSPELDEIRYHLKNNCEGNTSECDICEKGAFCEMHIKKSYKNEEGYTCGICSNIFSQRNSLKIHISTVHLGEKNYKCQLCDYSANEKRTLKRHISSVHLGEKNCKCQLCDYSTNRKGTLKKHISSVHLGEKKYKCELCDYSANHKISLKIHISSVHSKDKNYKCELCDYSANRKAHVKNHISSVHLGEKYHKCQLCDYSANHRRNLQKHVSSVHLEEKNHKCQFCDHSTNRKEDLESHINGKHLNTNKYNCDFCDYFSFYRNQLRKHIKKRHVNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -