Haxy011114.1
Basic Information
- Insect
- Harmonia axyridis
- Gene Symbol
- -
- Assembly
- None
- Location
- chr2:1992181-1994211[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00053 0.047 14.7 3.1 1 23 136 159 136 159 0.97 2 15 0.002 0.18 12.8 3.0 1 23 165 188 165 188 0.97 3 15 0.039 3.4 8.8 0.1 1 23 194 217 194 217 0.90 4 15 0.00033 0.029 15.3 2.0 1 23 223 246 223 246 0.95 5 15 0.0019 0.17 12.9 0.3 1 23 252 275 252 275 0.97 6 15 0.0053 0.47 11.5 0.7 1 23 281 304 281 304 0.97 7 15 9.9e-06 0.00088 20.1 0.5 1 23 310 333 310 333 0.98 8 15 9.2e-05 0.0082 17.1 0.8 1 23 338 361 338 361 0.97 9 15 0.0045 0.4 11.7 0.3 1 23 367 390 367 390 0.97 10 15 0.00049 0.044 14.8 2.6 1 23 396 419 396 419 0.97 11 15 0.00011 0.0097 16.8 0.9 1 23 424 447 424 447 0.97 12 15 0.00049 0.044 14.8 2.6 1 23 453 476 453 476 0.97 13 15 0.0006 0.053 14.5 0.4 1 23 481 504 481 504 0.97 14 15 0.00031 0.028 15.4 2.3 1 23 510 533 510 533 0.97 15 15 0.00018 0.016 16.2 2.2 1 23 539 562 539 562 0.96
Sequence Information
- Coding Sequence
- ATGTTTTCAAATGGAGCAGTATGCACCAGTGAACAAGAATCGAAAGAGATACATTTTTCTTCAGAATGTACAGATAATATTGCCACAAATGACGAGTTGGCAGTTTCGAGAACAACTGGCGAAAATTGCAAGACCCCATATCCAGACGATGAGAATGATGAAAATCTAGATGTAAAGATTGAAATTTCAGAAATTTCTGTGGGATGGGATGAAAATAGTTTGAATGAGAATAAAGAATTTAAGGTGAAAATTGAAAAAGATAACAAGTATGTTGCGAGTGAGGAAGAGATTCTTAGTTCCAACTTAAAGAATGAAAAAAGTTATCAATATAAAGAAGGAAAGGTGATTCTGAAATACCTCTGTAATGGTCACAGAAAAATAGATCAACGTAATGTATTGAAGAAACATAAATGTACATTCTGTGATTATGCTGCAAAATCAAAATGGCACCTCCAAAATCATATAAATTCCATTCATTTAGATATAAAGCAGCACAAATGTGACTTATGTGATTATGCTACTACTCGAATATATACTCTCAAGCATCACGTAAATTCTGTTCATTTAAAGATAAAGAAACATATATGTGTTCTCTGCGATTATGCTGCAAGTTCAAAAGGAACCCTCAATTCTCATCTAGATGCTGTTCATTTAAATGTGAAGCAGCACAATTGTGACATATGTGATTATGCTGCTACTCAAAAAAGTACTCTCAAGCATCACGTAAATTCTGTTCATTTAAAGATAAAGAAACACAAATGTGTTCTCTGCGATTATGCTGCAAGTTCAAAAGGGACCCTCAATATTCATCTAAATTCTGTTCATTTAAAGGAGAATCAGCACAAATGTGACTTATGTGATTATGCTACGACACTAAAAATTTCTCTGAAAGAGCATGTGAATTCTGTTCATATGAATATGAAGAAATATAAATGTGGCTTCTGTGATTATGCTTCAAGTCAAAAAGGGAATCTCAAAAATCATATAAATTCCGTTCATTTAAAGGTGAAACACCAATGTGACTTATGTGATTATGCTACAACTCAAAAAGATTCTCTCAAAGATCACGTTAATTCTGTTCACTTAAACATAAGGAAATATAAATGTGCTCTATGCGATTATGCTGCAATTCGAAAACGTCACCTCGAAGGTCACGTAAACTCCATTCATTTGAACATAAAGAAACATAAATGTGACTTCTGTGATTATGCTGCATCTCATAAAGGAAATCTCAAATATCATATAAATTCTGTTCATTTGAATGTGAAGCACCAATGTGACTTATGTGATTATGCTACGACTCGAAAAGAATCTCTCAGAGACCATGTGAATTCTATTCATTTAAACATTAAGAAACATAAATGTGACTTCTGTGATTATGCCGCATCTCATAAAGGAAATCTCAAATATCATATAAATTCTGTTCATTTGAATGTGAAGCACCAATGTGAGTTATGTGATTATGCTGCGACTCAAAAAGAATCTCTCAGAGACCATGTGAATTCTATTCATTTGAACATAAAGGAACATAAATGTGACTTATGCGATTATGCTACAGTTCATAAAGGTACTCTCAAGCGACACGTAAATTCAGTTCATTTAAAATTGAAGAAGCATAAATGTGCATTATGCGATTATGCTACAAGTTCAAAATCTAATCTCAAAACTCATTTTAATTCTGTTCATTATCATCACTTAAGTAAGTGA
- Protein Sequence
- MFSNGAVCTSEQESKEIHFSSECTDNIATNDELAVSRTTGENCKTPYPDDENDENLDVKIEISEISVGWDENSLNENKEFKVKIEKDNKYVASEEEILSSNLKNEKSYQYKEGKVILKYLCNGHRKIDQRNVLKKHKCTFCDYAAKSKWHLQNHINSIHLDIKQHKCDLCDYATTRIYTLKHHVNSVHLKIKKHICVLCDYAASSKGTLNSHLDAVHLNVKQHNCDICDYAATQKSTLKHHVNSVHLKIKKHKCVLCDYAASSKGTLNIHLNSVHLKENQHKCDLCDYATTLKISLKEHVNSVHMNMKKYKCGFCDYASSQKGNLKNHINSVHLKVKHQCDLCDYATTQKDSLKDHVNSVHLNIRKYKCALCDYAAIRKRHLEGHVNSIHLNIKKHKCDFCDYAASHKGNLKYHINSVHLNVKHQCDLCDYATTRKESLRDHVNSIHLNIKKHKCDFCDYAASHKGNLKYHINSVHLNVKHQCELCDYAATQKESLRDHVNSIHLNIKEHKCDLCDYATVHKGTLKRHVNSVHLKLKKHKCALCDYATSSKSNLKTHFNSVHYHHLSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -