Haxy010549.1
Basic Information
- Insect
- Harmonia axyridis
- Gene Symbol
- -
- Assembly
- None
- Location
- chr2:1194583-1196325[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00089 0.079 13.9 1.0 1 23 64 87 64 87 0.95 2 17 0.052 4.6 8.4 0.5 1 23 93 116 93 116 0.95 3 17 0.00015 0.013 16.4 3.2 1 23 122 145 122 145 0.97 4 17 0.0032 0.29 12.2 3.3 1 23 151 174 151 174 0.97 5 17 0.00014 0.013 16.4 3.3 1 23 180 203 180 203 0.95 6 17 0.0071 0.63 11.1 3.0 1 23 238 261 238 261 0.97 7 17 7.4e-05 0.0066 17.3 2.2 1 23 267 290 267 290 0.97 8 17 6.3e-05 0.0056 17.6 1.7 1 23 296 319 296 319 0.97 9 17 0.0032 0.28 12.2 4.3 1 23 325 348 325 348 0.97 10 17 0.042 3.7 8.7 2.1 1 23 354 377 354 377 0.97 11 17 0.00076 0.068 14.2 4.3 1 23 383 406 383 406 0.97 12 17 0.00014 0.012 16.5 4.3 2 23 413 435 413 435 0.96 13 17 0.00025 0.023 15.7 2.8 1 23 441 464 441 464 0.96 14 17 0.0006 0.054 14.5 3.3 1 23 470 493 470 493 0.96 15 17 9e-06 0.0008 20.2 1.3 1 23 499 522 499 522 0.98 16 17 0.0011 0.094 13.7 1.7 1 23 528 551 528 551 0.98 17 17 0.00018 0.016 16.2 0.6 2 23 558 580 557 580 0.96
Sequence Information
- Coding Sequence
- ATGGAAGATGTTGATATTTCCGAACATTTCATTGATGAAAATGCAGTTTATGACAGGACATTGTACTTGGAAAATATCCATGTAAACAACTTGGAATATCTATCTGAACATAAAGGTTTTCCTAATTCTTTAAAACCGAAAGAATCAACCCAAATTCATGAAGAATTCTTTAATTTGAAAATGGAAAAACATGATTGTAACCTATGTGATTACGCTACAACTCTGAAAAATAATCTCAAACAACATATACTTTCTATTCATCCAAATCTGAAGGCACATAAGTGTAGCCTATGTGATTATGCTGCGAACCAGAAAGTGATTCTCAAACGACATATTGATTCAGTTCATTTAAAATTGAAGAAACATAAGTGTCACTTTTGTGATTATGCTGGAACTGTGAAAGATAATCTTCAAAAACACATAAAGTCAGTCCATGTAAATTTGAAGAAACATAAGTGTCAACTGTGTGATTATTCTGCAAATTATAAAGCGCATATCAATCAACACATGAGGTCAGTTCACTCGAATTTGAAGGAACATAAATGTAACCTCTGTGATTATGCTACAAATCAGAAGGGACATCTCAATGCACACATGAATTTTAATCATTTAAATTTGAAGGAACATAAATTTAACCTGTGTGATTATGCTACAAATAGGAAATTGACTCTCAAAAAACGTATGAAATCAGTCCATGTAAATTTAAAGAAACATAAGTGTCAACTGTGTGATTATGCTGCAAAGTATAAAGCTCATATCAATCAACACATGAAGTCAGTTCACTCGAATTTGAAGGAACATAAATGTAACCTCTGTGATTATGCTACAAATCAGAAGGGACATCTCAACGCACACCTGAATTCTATTCATTCAAATTTGAGGGAGCATAAATGTAACCTGTGTGATTATGCTACAAATAGGAAAGTGACTCTTGAAAAACACATAAAATCTATTCACGTTAATTTGAGAGAACATAAATGTCAACTGTGTGATTATGCTGCAAATCATAAAGTGCATCTCAATCAACACATGAGTTCTGTACACTTGAATTTGAAGGAACATAAATGTAACCAGTGTGATTATGCTACAAATAAGAAATGGATTCTCGAACAACACATAAAATCATTCCATGTAAATTTGAAAGAACACAAGTGTCAAATGTGTGATTATGCAACAAATCATAAAAGATATCTCAATGACCACATGAATTCTGTTCATTTGAATTTGAAGGAAAATGAGTGTCACCTGTGTGATTATGCTACAGCTCATAAATCACATCTCAATCAACACATGAATTCTGTTCACTTAAAAATAAAGAATCATATGTGTCACCTCTGTGATTTTGCTACAAGTCAGAAACCAAGTCTCAAACGACATATAAATTCAATTCATTTAAAATTGTATGAACATAAATGTCACCTATGTGACTATGGTACTAGTCGATATATGAATCTCAAACAACATATAGAATCTGTTCATATAAATTTCAAAGAATATAAATGTAATCTCTGTGATTATGCTACAAATCAGAAGGGACATCTCAATGAACACATGAATTCTGTTCATTTGAATTTGAAGAAATATAAATGTAACCTGTGTGATTATGCTACAGTTCATAAAAGATATCTTCCTCGACACATGAATTCTGTTCACTTGAAAATTAAGGATCAGAAGTGTCACCTCTGTGATTATGCTGCAAATCAGAGAGGGAATCTCAAACGACATATAGCTTCAGTTCATTAA
- Protein Sequence
- MEDVDISEHFIDENAVYDRTLYLENIHVNNLEYLSEHKGFPNSLKPKESTQIHEEFFNLKMEKHDCNLCDYATTLKNNLKQHILSIHPNLKAHKCSLCDYAANQKVILKRHIDSVHLKLKKHKCHFCDYAGTVKDNLQKHIKSVHVNLKKHKCQLCDYSANYKAHINQHMRSVHSNLKEHKCNLCDYATNQKGHLNAHMNFNHLNLKEHKFNLCDYATNRKLTLKKRMKSVHVNLKKHKCQLCDYAAKYKAHINQHMKSVHSNLKEHKCNLCDYATNQKGHLNAHLNSIHSNLREHKCNLCDYATNRKVTLEKHIKSIHVNLREHKCQLCDYAANHKVHLNQHMSSVHLNLKEHKCNQCDYATNKKWILEQHIKSFHVNLKEHKCQMCDYATNHKRYLNDHMNSVHLNLKENECHLCDYATAHKSHLNQHMNSVHLKIKNHMCHLCDFATSQKPSLKRHINSIHLKLYEHKCHLCDYGTSRYMNLKQHIESVHINFKEYKCNLCDYATNQKGHLNEHMNSVHLNLKKYKCNLCDYATVHKRYLPRHMNSVHLKIKDQKCHLCDYAANQRGNLKRHIASVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -