Haxy018746.1
Basic Information
- Insect
- Harmonia axyridis
- Gene Symbol
- -
- Assembly
- None
- Location
- chr4:1094257-1101004[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.5 44 5.3 0.1 5 23 69 88 68 88 0.92 2 27 3e-05 0.0026 18.6 0.8 1 23 94 117 94 117 0.97 3 27 0.0064 0.57 11.2 0.8 2 23 124 146 123 146 0.93 4 27 0.0034 0.31 12.1 2.2 1 23 152 175 152 175 0.97 5 27 0.0039 0.35 11.9 3.6 1 23 209 232 209 232 0.96 6 27 0.00012 0.011 16.7 1.3 1 23 238 261 238 261 0.97 7 27 0.00035 0.032 15.2 1.6 1 23 267 290 267 290 0.97 8 27 0.023 2 9.5 1.6 2 23 304 326 304 326 0.95 9 27 9.5e-05 0.0085 17.0 1.3 1 23 332 355 332 355 0.95 10 27 1.3 1.1e+02 4.0 1.6 1 23 361 384 361 384 0.83 11 27 0.048 4.3 8.5 0.5 1 23 390 413 390 413 0.97 12 27 0.03 2.6 9.1 0.6 1 23 487 510 487 510 0.94 13 27 0.0036 0.32 12.0 0.6 2 23 517 539 516 539 0.94 14 27 0.0034 0.31 12.1 2.2 1 23 545 568 545 568 0.97 15 27 0.75 67 4.7 4.4 4 23 577 597 577 597 0.94 16 27 0.0039 0.35 11.9 3.6 1 23 603 626 603 626 0.96 17 27 0.00012 0.011 16.7 1.3 1 23 632 655 632 655 0.97 18 27 0.00035 0.032 15.2 1.6 1 23 661 684 661 684 0.97 19 27 0.023 2 9.5 1.6 2 23 698 720 698 720 0.95 20 27 9.5e-05 0.0085 17.0 1.3 1 23 726 749 726 749 0.95 21 27 0.044 3.9 8.6 1.7 1 23 755 778 755 778 0.94 22 27 0.048 4.3 8.5 0.5 1 23 784 807 784 807 0.97 23 27 7.7 6.8e+02 1.6 0.0 12 23 903 915 898 915 0.85 24 27 0.0034 0.3 12.1 2.0 1 23 950 973 950 973 0.96 25 27 0.0015 0.13 13.2 2.3 1 23 979 1002 979 1002 0.96 26 27 0.026 2.3 9.4 2.2 1 23 1008 1031 1008 1031 0.95 27 27 1.5 1.3e+02 3.8 0.1 1 13 1037 1049 1037 1053 0.83
Sequence Information
- Coding Sequence
- ATGGAGGCCGAAATATTTAAAGTAGAAGTTGATGAAGATGAGATCAAAGAATCATTTTTTAGCTACAATGCTCAGTACATAGATGATGAAAAGTTAACTTATAAACCAAATACTGAAACTGTAGAACACTTTGTAGAAGGGAATGAAGGAACTAATAAGATGATAGAAACTCCAAAAAAATATGAAGAGGAGATATTATCCAACCTTTGTGATTTTGCTTCAGCCCAAAATCTGGACCTTAAAAAGCATATAAATTCAGTTCACTTGACGATAAAAAAATATCAGTGTCATCTATGTGATTACACCGCAGCTCAAAAGGACAACCTAAAAACTCATATAGAATCAGTTCATTCAAATTTGAAGAAAAATAAGTGTCACATATGCAATTTTGATACTGCCCAAAATATAAACCTTGAAAAGCATATAGAATTTATTCATTTGAATAAAAAAGAGCATAAATGTCACCTTTGTGACTATGCCTCATTTGACCAGAGAAGTCTTGAAGACCATATAAATTCAGTTCATTTGAATTTGAAGAAAAATGCATCTCCAAAGTGTCATACCACAACCCATAAAGGATGCTTAAAACAACATAAAAATTCAGTTCATTTGAATTTAAAGATACATAAATGTCATCTATGTGATTTTTCCTCAGACCGAAATGTGAAACTTAAAAGGCATATAGATTCAGTTCACTTGAAGATAAAAGAATATCAGTGTCATCTATGTGATTACTCCGCAGCTCGAAAGGACACCCTAAAATCTCATATAGAATCAACTCATTTAAATTTGAGGAAATATAAGTGCCACTTATGTGATTTTGCTACTGCCAGAAATATGTACCTTAAAAAGCATATAGAATCGGTTCATTTGAATATAAAACAGCATAAGTTGAATAAAAAAGAACGTAGGTGTCACCTTTGTGACTGTGCTACATATGACCAGAGAAGTCTTGAAGAGCATATAAATGCGGTTCATTTGAATTTAAAGAAATATGCATGTAAGAAGTGTGATTATGCCACAGCCCGTAAAGGATGCTTAAGACGACATATGAATGCAGTTCATTTGAATTTGAAGAAACATAAATGTCACTTATGTGATTATGCTTCAGATAGAAAGACGCTTATTAAACCACATATAGAATATGTTCATTTGAATATAAGACGCTATAAGTGTCATCTTTGTGATTATGCCTCGGCTGGAAGAGGAATATTGAAAACTCATATTAAATCAATCCATTTGAATATGGAGACCGAAATATTGAAAGTAGAAGTTCATGAAGATGAGATCAAAGAATCATTTTTTAGCTACAATGCTCAGTATATAGATGATGAAAGGTTAACTTATAAACCGAAAACTGAAAATGTAGAATACTTTGTAGAAGTGAATGAAGGATCTGATAAGATGATAGAAACTCCAAAAAAATATGAAGAGGAGGTTCACTTGACGATAAAAAAATATCTGTGTCATCTATGTGATTACACCGCACTTCAAAAGGACAACCTGAATACTCATATAGAATCAGTTCATTCAAATTTGAAGAAAAATAAGTGTCACATATGCAATTTTGATACTGCCCAAAATATAAACCTTGAAAAGCATATAGAATTGGTTCATTTGAATAAAAAAGAGCATAAATGTCACCTTTGTGACTATGCCTCATTTGACCAGAGAAGTCTTGAAGACCATATAAATTCAGTTCATTTGAATTTGAAGAAAAATGCATCTCCAAAGTGTGATCATACCACAACCCATAAAGGATGCTTAAAACAACATAAAAATTCAGTTCATTTGAATTTAAAGATACATAAATGTCACCTATGTGATTTTTCCTCAGACCGAAATGTGAAACTTAAAAGGCATATAGATTCAGTTCACTTGAAGATAAAGGAATATCAGTGTCATCTATGTGATTACTCCGCAGCTCGAAAGGACACCCTAAAATCTCATATAGAATCAACTCATTTAAATTTGAGGAAATATAAGTGCCACTTATGTGATTTTGCTACTGCCCGAAATATGTACCTTAAAAAGCATATAGAATCGGTTCATTTGAATATAAAACAGCATAAGTTGAATAAAAAAGAACGTAGGTGTCACCTTTGTGACTGTGCTACATATGACCAGAGAAGTCTTGAAGAGCATATAAATGCGGTTCATTTGAATTTAAAGAAATATGCATGTAAGAAGTGTGATTATGCCACAGCCCGTAAAGGATGCTTAAGACGACATATGAATGCAGTTCATTTGAATTTGAAGAAACATAAATGTCACTTATGTGATTATGCTTCAGATAGAAAGGAGCTTATTAATTCACATATAGAATATGTTCATTTGAATATAAGACGCTATAAGTGTCATCTTTGTGATTATGCCTCGGCTGGAAGAGGAATATTGAAAACTCATATTAAATCAATCCATTTGAATATGGAGACCGAAATATTGAAAGTAGAAGTTCATGAAGATGAGATCAGAGAATCATTTTTTAGCTACAATGCTCAGTACATAGATGATGGAAGGTTAACTTATAAACCGAAAACTGAAAATGTAGAATACTTTGTAGAAGTGAATGAAGGAACTGATAAGATGATAGAAACTCCAAAAAAATATGAAGAGGAGGTATTATCTGATGTGAAATTAAATGAGACTGCCAAGGATATTGATCCAAAGAAATATAACTGTGACCTTAGTGATGTTGCTTCAGCCCGAAATCTGGACCTTAAAAAGCATATAAATTCAGTTCACTTGACGATGAAGCAATTTCAATGTAATCTATATGATTACGATGCAGCTCCAAAAGACAACCTTGAAAAGCATATAGAATTGCTTCATTTGAATAAAAAAGAGCATAAGTGTCACCTTTGTGACTATGCTACATTTGACCAGAGAAGTCTTGAAGAGCATATAAATTTGGTTCATTCGAAATTGAAGAAATATGCATGTTTGAAGTGTGATTATGCCACAGCGCATAAAGGATGCTTAAAACGCCATATAAATTCAATTCATTTGAATTTGAAGAAACATAAATGTCACCTATGTGATTTTGCTTCTGACCGAAATGTGAAACTTAAAATTCATTTAGATTCAGTTCACTTGAAGATAAAGGAATATCAGTGCCATTTATGTGATTACGCCGCAGCTCGAAAAGGACAAACTGAAAACTCATATAGAATCAATTCATTTAAATTTGAAGAAATATAA
- Protein Sequence
- MEAEIFKVEVDEDEIKESFFSYNAQYIDDEKLTYKPNTETVEHFVEGNEGTNKMIETPKKYEEEILSNLCDFASAQNLDLKKHINSVHLTIKKYQCHLCDYTAAQKDNLKTHIESVHSNLKKNKCHICNFDTAQNINLEKHIEFIHLNKKEHKCHLCDYASFDQRSLEDHINSVHLNLKKNASPKCHTTTHKGCLKQHKNSVHLNLKIHKCHLCDFSSDRNVKLKRHIDSVHLKIKEYQCHLCDYSAARKDTLKSHIESTHLNLRKYKCHLCDFATARNMYLKKHIESVHLNIKQHKLNKKERRCHLCDCATYDQRSLEEHINAVHLNLKKYACKKCDYATARKGCLRRHMNAVHLNLKKHKCHLCDYASDRKTLIKPHIEYVHLNIRRYKCHLCDYASAGRGILKTHIKSIHLNMETEILKVEVHEDEIKESFFSYNAQYIDDERLTYKPKTENVEYFVEVNEGSDKMIETPKKYEEEVHLTIKKYLCHLCDYTALQKDNLNTHIESVHSNLKKNKCHICNFDTAQNINLEKHIELVHLNKKEHKCHLCDYASFDQRSLEDHINSVHLNLKKNASPKCDHTTTHKGCLKQHKNSVHLNLKIHKCHLCDFSSDRNVKLKRHIDSVHLKIKEYQCHLCDYSAARKDTLKSHIESTHLNLRKYKCHLCDFATARNMYLKKHIESVHLNIKQHKLNKKERRCHLCDCATYDQRSLEEHINAVHLNLKKYACKKCDYATARKGCLRRHMNAVHLNLKKHKCHLCDYASDRKELINSHIEYVHLNIRRYKCHLCDYASAGRGILKTHIKSIHLNMETEILKVEVHEDEIRESFFSYNAQYIDDGRLTYKPKTENVEYFVEVNEGTDKMIETPKKYEEEVLSDVKLNETAKDIDPKKYNCDLSDVASARNLDLKKHINSVHLTMKQFQCNLYDYDAAPKDNLEKHIELLHLNKKEHKCHLCDYATFDQRSLEEHINLVHSKLKKYACLKCDYATAHKGCLKRHINSIHLNLKKHKCHLCDFASDRNVKLKIHLDSVHLKIKEYQCHLCDYAAARKGQTENSYRINSFKFEEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -