Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 1.1e-06 0.00039 20.6 0.0 4 34 18 48 15 59 0.85

2 2 0.017 6 7.2 0.0 4 32 68 95 65 105 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	1.1e-06	0.00039	20.6	0.0	4	34	18	48	15	59	0.85
2	2	0.017	6	7.2	0.0	4	32	68	95	65	105	0.88

Coding Sequence: ATGGTAAGGACTTACAAGAGGAAGATTAATCGTTCCGCTATATCGGAGAAAAACATATGTGCCGCTGTTGAAGATGTTTTGCAAGGAAGACTCTCAATAAGAATGGCAGCCTCAACCTACAACTTGACAAAATCGACCGTTGGATTTAAGATGGTAAGGTCTTACAAGAGGAAGACTAATCGTTCCGCTATATCGGAGAAAAACATATGTGCCGCTGTTGAAGATGTTTTGCAAGGAAGACTGCAAAGAATGGCAGCCTCAACCTACAACTTGACAAAATCGACCGTTGAATTGACAGAAAAGGCGTATCAGAAAGCTTTTACTCTGGCCAACATATGTTCTGGGTTTAGAAAAATCGGTATTGTGCCTTTTGATAGAGGTATTTTTAAGGAAGATGATTTCGCTGCTGCATCTGTAACAGATTCCAGGGATCCAGTACCAACAGACGCACCATCAACATCTGCGTTGACTAGAAGAAAAAACAATAACAAAACAAAAAAGAAGCAAGTTAAACATAACCTGTTTGATAATGTAGAACAACAAGCGAATGATTCAGATGATTCCGGGGAGAAAGTGAGTTACGCTGATGATGAGTCTGACTGTTTAAGTGAAATGGACCGTGAAAATTCCGATGAAGAATTCATGCAAGATGTAGACTCTATCATAAATCCTGAATCTGGGATGCCAAATATTAAAATCGGTGACTTTTTGCTGGTTAAGTATTGCACGAAGAAAACCCAAAAATATTATATTGGAGAAGTAGAAGAAATGGTCGACGGAAAATATTTGATAAATTTTTTCAGAAAGAAAGGAACTGGATTTATCTTACACCAAGTACCTGATAAGGATCTGATAGAATTTGAACAAGTGGAATTAAAACTACCTAAGCCATAA
Protein Sequence: MVRTYKRKINRSAISEKNICAAVEDVLQGRLSIRMAASTYNLTKSTVGFKMVRSYKRKTNRSAISEKNICAAVEDVLQGRLQRMAASTYNLTKSTVELTEKAYQKAFTLANICSGFRKIGIVPFDRGIFKEDDFAAASVTDSRDPVPTDAPSTSALTRRKNNNKTKKKQVKHNLFDNVEQQANDSDDSGEKVSYADDESDCLSEMDRENSDEEFMQDVDSIINPESGMPNIKIGDFLLVKYCTKKTQKYYIGEVEEMVDGKYLINFFRKKGTGFILHQVPDKDLIEFEQVELKLPKP

Sequence clustering based on sequence similarity using MMseqs2